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Leptospira
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This page provides access to genotypic data for Leptospira isolates based on core genome MLST (cgMLST). See references for more details.

leptospiraMLST@pasteur.fr

On 1st January 2025, registration will be permanently mandatory to access data curated after the 31st of December 2024. Note that access via the application programming interface (API) will also require authentication to access recent data (API authentication help link).

Please contact us if you have any questions.

Alleles & profiles database
The typing database contains nomenclature - allele definitions that provide an identifier for every unique allele sequence, and MLST profiles that index each unique combination of alleles with a sequence type (ST).
Isolates & genomes database
The isolate database consists of isolate records containing provenance and phenotype information linked to molecular typing information. These records may also include genome assemblies.
Data submission
How does it work?
Submission of data for curation
Quality criteria for whole genome assembly
Metadata fields description
Template for *Leptospira* genomes

We appreciate if you can recognize our efforts in the acknowledgments section of your publications:

We thank the Institut Pasteur teams for the curation and maintenance of BIGSdb-Pasteur databases at https://bigsdb.pasteur.fr/.

Curators access
Data Curation is performed on a voluntary basis and is based on a community effort.
Sequences & profiles (curators only)
Isolates (curators only)
Other Information
BIGSdb manual
Edit on GitLab