Description of database fields

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field namecommentsdata typeallowed valuesrequiredmaximum length (characters)
idprimary key integer - yes 6
isolateisolate name text - yes 20
aliasesalternative names for isolatetext (multiple)-no-
referencesPubMed ids that link to publications that describe or include recordinteger (multiple)-no-
biosample text - no 20
accession_number text - no 20
cladeIf not known, put ''Unknown'' text
P1
P2
S1
S2
Unknown
no -
speciesif not known, put ''Unknown'' text
abararensis
adleri
ainazelensis
ainlahdjerensis
alexanderi
alstonii
andrefontaineae
bandrabouensis
barantonii
biflexa
borgpetersenii
bourretii
bouyouniensis
brenneri
broomii
chreensis
congkakensis
dzoumogneensis
ellinghausenii
ellisii
fainei
fletcheri
fluminis
gomenensis
haakeii
harrisiae
hartskeerlii
idonii
ilyithenensis
inadai
interrogans
jelokensis
johnsonii
kanakyensis
kemamanensis
kirschneri
kmetyi
kobayashii
koniamboensis
langatensis
levettii
licerasiae
macculloughii
mayottensis
meyeri
montravelensis
mtsangambouensis
neocaledonica
noguchii
noumeaensis
ognonensis
perdikensis
perolatii
ryugenii
saintgironsiae
sanjuanensis
santarosai
sarikeiensis
selangorensis
semungkisensis
stimsonii
terpstrae
tipperaryensis
vanthielii
venezuelensis
weilii
wolbachii
wolffii
yasudae
yanagawae
Other
Unknown
yes -
serogroupif not known, put ''not examined'' text - yes 25
serovarif not known, put ''not examined'' text - yes 25
isolation_yearyear, when the strain was isolated integer - no 4
sequencing_yearyear, when the strain was sequenced integer - no 4
passageNumber of passages done in the lab, if not known put ''?'' text - no 10
world_regionworld region, where the strain was isolated text
Australia and New Zealand
Caribbean
Central America
Central Asia
Eastern Africa
Eastern Asia
Eastern Europe
Melanesia
Micronesia
Middle Africa
Northern Africa
Northern America
Northern Europe
Polynesia
South America
South-eastern Asia
Southern Africa
Southern Asia
Southern Europe
Western Africa
Western Asia
Western Europe
Unknown
yes -
countrycountry, where the strain was isolated text
Afghanistan
Albania
Algeria
Andorra
Angola
Antigua & Barbuda
Argentina
Armenia
Australia
Austria
Azerbaijan
Bahamas
Bahrain
Bangladesh
Barbados
Belarus
Belgium
Belize
Benin
Bhutan
Bolivia
Bosnia & Herzegovina
Botswana
Brazil
Brunei
Bulgaria
Burkina Faso
Burma
Burundi
Cambodia
Cameroon
Canada
Cape Verde
Central African Republic
Chad
Chile
China
Colombia
Comoros
Congo [DRC]
Congo [Republic]
Costa Rica
Croatia
Cuba
Cyprus
Czech Republic
Denmark
Djibouti
Dominica
Dominican Republic
East Timor
Ecuador
Egypt
El Salvador
Equatorial Guinea
Eritrea
Estonia
Ethiopia
Fiji
Finland
France
Gabon
Georgia
Germany
Ghana
Greece
Grenada
Guadeloupe
Guatemala
Guinea
Guinea Bissau
Guyana
Haiti
Honduras
Hungary
Iceland
India
Indonesia
Iran
Iraq
Ireland
Isle of Man
Israel
Italy
Ivory Coast
Jamaica
Japan
Jordan
Kazakhstan
Kenya
Kiribati
Kuwait
Kyrgyzstan
Laos
Latvia
Lebanon
Lesotho
Liberia
Libya
Liechtenstein
Lithuania
Luxembourg
Macedonia
Madagascar
Malawi
Malaysia
Maldives
Mali
Malta
Marshall Islands
Martinique
Mauritania
Mauritius
Mayotte
Mexico
Micronesia
Moldavia
Moldova
Monaco
Mongolia
Montenegro
Morocco
Mozambique
Namibia
Nauru
Nepal
New Caledonia
New Zealand
Nicaragua
Niger
Nigeria
North Korea
Norway
Oman
Pakistan
Palau
Palestinian territories
Panama
Papua New Guinea
Paraguay
Peru
Philippines
Poland
Portugal
Qatar
Reunion
Romania
Russia
Rwanda
Samoa
San Marino
Saudi Arabia
Senegal
Serbia
Seychelles
Sierra Leone
Singapore
Slovakia
Slovenia
Solomon Islands
Somalia
South Africa
South Korea
Spain
Sri Lanka
St. Kitts & Nevis
St. Lucia
Sudan
Suriname
Swaziland
Sweden
Switzerland
Syria
Tahiti
Taiwan
Tajikistan
Tanzania
Thailand
The Gambia
The Netherlands
Togo
Tonga
Trinidad & Tobago
Tunisia
Turkey
Turkmenistan
Tuvalu
UK
USA
Uganda
Ukraine
United Arab Emirates
Uruguay
Uzbekistan
Vanuatu
Vatican City
Venezuela
Vietnam
Yemen
Zambia
Zimbabwe
Unknown
yes -
city text - no 20
hostenvironment or the actual host. If not known, put ''Unknown'' text - yes 30
sample_typebody, fluid, organ, etc (e.g. blood, stools). If not known, put ''Unknown'' text - yes 50
source_lablaboratory, where the sequencing was done text - yes 35
resistance_info text - no 30
province text - no 20
living_areaarea, where the patient is living text
rural
urban
no -
seasonseason, when the patient was infected (e.g. rainy season) text - no 20
age_yrage of patient in years integer - no 20
age_mthmonth part of age (0-11) for patients under 1 year old integer - no 20
sexsex of patient text
female
male
no -
professionjob of the patient, which could be connected to the infection source text - no 20
travelcountry or region, where the patient was traveling recently text - no 20
infection_sourceprovide the infection source, if known text - no 20
other_diseases text - no 20
ethnicityethnicity of the patient text - no 20
reinfection text
no
yes
no -
days_with_symptomsPut the number of days with clinical symptoms integer - no 20
clinical_conditionsSeparate conditions with a comma. Suggestions: Headache, Arthralgia, Myalgia, Nausea, Vomiting, Diarrhoea, Constipation, Cough, Rash, abdominal_pain, fever. text - no 20
seen_rat_last_two_weeks text
no
yes
no -
outcome_of_infection text
no
yes
no -
commentsany other comments text - no 1000
sendersender unique name, link to users integer Click for list of sender ids yes 4
curatorcurator who entered data,link to users integer Click for list of curator ids yes 4
date_entereddate first entered date - yes 10
datestampdate last modified date - yes 10