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Leptospira locus/sequence definitions database

This sequence definition database contains allele and profile data representing the total known diversity of the considered species or group of related species. Every new ST deposited in this database should have a corresponding record in the isolate database.

Query a sequence

Single sequence

Query a single sequence or whole genome assembly to identify allelic matches.

Batch sequences

Query multiple independent sequences in FASTA format to identify allelic matches.

Find alleles

By specific criteria

Find alleles by matching criteria (all loci together)

By locus

Select, analyse and download specific alleles from a single locus.

Search for allelic profiles

By specific criteria

Search, browse or enter list of profiles

By allelic profile

This can include partial matches to find related profiles.

In a batch

Look up multiple allelic profiles together.
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DOWNLOADS
  • Allele sequences
  • Allelic profiles
EXPORT
  • Locus sequences
  • Profile sequences
  • Profiles
ANALYSIS
  • BURST
  • Locus Explorer
  • Sequence comparison
  • Sequence similarity
CUSTOMISE
  • General options
  • Scheme options
INFORMATION
  • About BIGSdb
  • Database status
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