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Listeria monocytogenes
© Images : Institut Pasteur/Antoinette Ryter & © Design : Institut Pasteur

BIGSdb-Lm provides access to genotypic data for Listeria isolates based on Multilocus Sequence Typing (MLST), core genome MLST (cgMLST) and other schemes. The database is now also accessible through RESTful API (see below). Please cite Nature Microbiology (2016) 2:16185! See references for more details.

listeriaMLST@pasteur.fr

Alleles & profiles database
The typing database contains nomenclature - allele definitions that provide an identifier for every unique allele sequence, and MLST profiles that index each unique combination of alleles with a sequence type (ST).
Isolates & genomes database
The isolate database consists of isolate records containing provenance and phenotype information linked to molecular typing information. These records may also include genome assemblies.
Data submission
Submission of data
Template for Listeria isolates

We appreciate if you can recognize our efforts in the acknowledgments section of your publications:

We thank the Institut Pasteur teams for the curation and maintenance of BIGSdb-Pasteur databases at https://bigsdb.pasteur.fr/.

Curators access
Data Curation is performed on a voluntary basis and is based on a community effort.
Sequences & profiles
Isolates
Other Information
BIGSdb manual
RESTful API access link
Nomenclature updates
Guidelines for cgMLST typing
Evaluation of de novo assemblers performances
Primers used for amplification and sequencing (MLST)
Seeliger collection revived by Jana Haase and Mark Achtman (PMID 22003999)
inlA premature stop codons
Listeria serogroups
Edit on GitLab