Institut Pasteur MLST databases and software

BIGSdb-Lm provides access to genotypic data for Listeria isolates based on Multilocus Sequence Typing (MLST), core genome MLST (cgMLST) and other schemes. The database is now also accessible through RESTful API (see below). Please cite Nature Microbiology (2016) 2:16185! See references for more details.

listeriaMLST@pasteur.fr

⚠ Maintenance: A BIGSdb-Pasteur maintenance is scheduled from Friday, July 17th 6PM (Central European Time) to Monday, July 20th morning. During this period, the server and API will be unavailable. Please note that job submission will not be available and all unfinished jobs will be killed. Sorry for any inconvenience. If any questions, contact us

Alleles & profiles database

The typing database contains nomenclature - allele definitions that provide an identifier for every unique allele sequence, and MLST profiles that index each unique combination of alleles with a sequence type (ST).

Isolates & genomes database

The isolate database consists of isolate records containing provenance and phenotype information linked to molecular typing information. These records may also include genome assemblies.

Data submission

Data Submission Guidelines

Pathogen-specific Quality Criteria

Accepted sequencing technologies

Metadata fields description

Template for Listeria isolates

Curators access

Data Curation is performed on a voluntary basis and is based on a community effort.