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Streptococcus thermophilus
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This page provides access to Multilocus Sequence Typing (MLST) data for Streptococcus thermophilus isolates. Please see references for more details.

streptococcusMLST@pasteur.fr

⛔ Maintenance: A BIGSdb-Pasteur maintenance is scheduled on Monday, April 07th. All services will be offline until late in the evening (Central European Time). During this period, the server and API will be unavailable. Please note that the job submission will be stopped and all unfinished jobs will be killed. Sorry for any inconvenience. If any questions, contact us

Data access policy note: since January 1st, 2025, registration and authentication are mandatory to access all data curated after this date, either via the web interface or via the application programming interface (API authentication help link). Please contact us if you have any questions.

Alleles & profiles database
The typing database contains nomenclature - allele definitions that provide an identifier for every unique allele sequence, and MLST profiles that index each unique combination of alleles with a sequence type (ST).
Isolates database
The isolate database consists of isolate records containing provenance and phenotype information linked to molecular typing information. These records may also include genome assemblies.
Data submission
Before contacting the curators, please download and read carefully the files below:
Submission of data for curation
Template for Streptococcus thermophilus isolates

We appreciate if you can recognize our efforts in the acknowledgments section of your publications:

We thank the Institut Pasteur teams for the curation and maintenance of BIGSdb-Pasteur databases at https://bigsdb.pasteur.fr/.

Curators access
Data Curation is performed on a voluntary basis and is based on a community effort.
Sequences and Profiles
Isolates
Other Information
BIGSdb manual
Primers used for amplification and sequencing (MLST)
Aruba - N/AAruba - N/AAfghanistan - N/AAfghanistan - N/AAngola - N/AAngola - N/AAnguilla - N/AAnguilla - N/AAlbania - N/AAlbania - N/AAland - N/AAland - N/AAndorra - N/AAndorra - N/AUnited Arab Emirates - N/AUnited Arab Emirates - N/AArgentina - N/AArgentina - N/AArmenia - N/AArmenia - N/AAmerican Samoa - N/AAmerican Samoa - N/AAntarctica - N/AAntarctica - N/AAshmore and Cartier Is. - N/AAshmore and Cartier Is. - N/AFr. S. Antarctic Lands - N/AFr. S. Antarctic Lands - N/AAntigua and Barb. - N/AAntigua and Barb. - N/AAustralia - 1Australia - 1Austria - 1Austria - 1Azerbaijan - N/AAzerbaijan - N/ABurundi - N/ABurundi - N/ABelgium - N/ABelgium - N/ABenin - N/ABenin - N/ABurkina Faso - N/ABurkina Faso - N/ABangladesh - N/ABangladesh - N/ABulgaria - 17Bulgaria - 17Bahrain - N/ABahrain - N/ABahamas - N/ABahamas - N/ABosnia and Herz. - N/ABosnia and Herz. - N/ABajo Nuevo Bank (Petrel Is.) - N/ABajo Nuevo Bank (Petrel Is.) - N/ASt-Barthélemy - N/ASt-Barthélemy - N/ABelarus - N/ABelarus - N/ABelize - N/ABelize - N/ABermuda - N/ABermuda - N/ABolivia - N/ABolivia - N/ABrazil - N/ABrazil - N/ABarbados - N/ABarbados - N/ABrunei - N/ABrunei - N/ABhutan - N/ABhutan - N/ABotswana - N/ABotswana - N/ACentral African Rep. - N/ACentral African Rep. - N/ACanada - N/ACanada - N/ASwitzerland - N/ASwitzerland - N/AChile - N/AChile - N/AChina - 6China - 6Côte d'Ivoire - N/ACôte d'Ivoire - N/AClipperton I. - N/AClipperton I. - N/ACameroon - N/ACameroon - N/ACyprus U.N. Buffer Zone - N/ACyprus U.N. Buffer Zone - N/ADem. Rep. Congo - N/ADem. Rep. Congo - N/ACongo - N/ACongo - N/ACook Is. - N/ACook Is. - N/AColombia - N/AColombia - N/AComoros - N/AComoros - N/ACape Verde - N/ACape Verde - N/ACosta Rica - N/ACosta Rica - N/ACoral Sea Is. - N/ACoral Sea Is. - N/ACuba - N/ACuba - N/ACuraçao - N/ACuraçao - N/ACayman Is. - N/ACayman Is. - N/AN. Cyprus - N/AN. Cyprus - N/ACyprus - N/ACyprus - N/ACzech Rep. - N/ACzech Rep. - N/AGermany - 1Germany - 1Djibouti - N/ADjibouti - N/ADominica - N/ADominica - N/ADenmark - N/ADenmark - N/ADominican Rep. - N/ADominican Rep. - N/AAlgeria - N/AAlgeria - N/AEcuador - N/AEcuador - N/AEgypt - 18Egypt - 18Eritrea - N/AEritrea - N/ADhekelia - N/ADhekelia - N/ASpain - N/ASpain - N/AEstonia - N/AEstonia - N/AEthiopia - N/AEthiopia - N/AFinland - 1Finland - 1Fiji - N/AFiji - N/AFalkland Is. - N/AFalkland Is. - N/AFrance - 97France - 97Faeroe Is. - N/AFaeroe Is. - N/AMicronesia - N/AMicronesia - N/AGabon - N/AGabon - N/AUnited Kingdom - 1United Kingdom - 1Georgia - N/AGeorgia - N/AGuernsey - N/AGuernsey - N/AGhana - N/AGhana - N/AGibraltar - N/AGibraltar - N/AGuinea - N/AGuinea - N/AGambia - N/AGambia - N/AGuinea-Bissau - N/AGuinea-Bissau - N/AEq. Guinea - N/AEq. Guinea - N/AGreece - 7Greece - 7Grenada - N/AGrenada - N/AGreenland - N/AGreenland - N/AGuatemala - N/AGuatemala - N/AGuam - N/AGuam - N/AGuyana - N/AGuyana - N/AHong Kong - N/AHong Kong - N/AHeard I. and McDonald Is. - N/AHeard I. and McDonald Is. - N/AHonduras - N/AHonduras - N/ACroatia - N/ACroatia - N/AHaiti - N/AHaiti - N/AHungary - N/AHungary - N/AIndonesia - N/AIndonesia - N/AIsle of Man - N/AIsle of Man - N/AIndia - 6India - 6Indian Ocean Ter. - N/AIndian Ocean Ter. - N/ABr. Indian Ocean Ter. - N/ABr. Indian Ocean Ter. - N/AIreland - 2Ireland - 2Iran - N/AIran - N/AIraq - N/AIraq - N/AIceland - N/AIceland - N/AIsrael - N/AIsrael - N/AItaly - 12Italy - 12Jamaica - N/AJamaica - N/AJersey - N/AJersey - N/AJordan - N/AJordan - N/AJapan - 1Japan - 1Baikonur - N/ABaikonur - N/ASiachen Glacier - N/ASiachen Glacier - N/AKazakhstan - N/AKazakhstan - N/AKenya - N/AKenya - N/AKyrgyzstan - N/AKyrgyzstan - N/ACambodia - N/ACambodia - N/AKiribati - N/AKiribati - N/ASt. Kitts and Nevis - N/ASt. Kitts and Nevis - N/AKorea - N/AKorea - N/AKosovo - N/AKosovo - N/AKuwait - N/AKuwait - N/ALao PDR - N/ALao PDR - N/ALebanon - N/ALebanon - N/ALiberia - N/ALiberia - N/ALibya - N/ALibya - N/ASaint Lucia - N/ASaint Lucia - N/ALiechtenstein - N/ALiechtenstein - N/ASri Lanka - N/ASri Lanka - N/ALesotho - N/ALesotho - N/ALithuania - N/ALithuania - N/ALuxembourg - N/ALuxembourg - N/ALatvia - N/ALatvia - N/AMacao - N/AMacao - N/ASt-Martin - N/ASt-Martin - N/AMorocco - N/AMorocco - N/AMonaco - N/AMonaco - N/AMoldova - N/AMoldova - N/AMadagascar - N/AMadagascar - N/AMaldives - N/AMaldives - N/AMexico - N/AMexico - N/AMarshall Is. - N/AMarshall Is. - N/AMacedonia - N/AMacedonia - N/AMali - N/AMali - N/AMalta - N/AMalta - N/AMyanmar - N/AMyanmar - N/AMontenegro - N/AMontenegro - N/AMongolia - 1Mongolia - 1N. Mariana Is. - N/AN. Mariana Is. - N/AMozambique - N/AMozambique - N/AMauritania - N/AMauritania - N/AMontserrat - N/AMontserrat - N/AMauritius - N/AMauritius - N/AMalawi - N/AMalawi - N/AMalaysia - N/AMalaysia - N/ANamibia - N/ANamibia - N/ANew Caledonia - N/ANew Caledonia - N/ANiger - N/ANiger - N/ANorfolk Island - N/ANorfolk Island - N/ANigeria - N/ANigeria - N/ANicaragua - N/ANicaragua - N/ANiue - N/ANiue - N/ANetherlands - N/ANetherlands - N/ANorway - N/ANorway - N/ANepal - N/ANepal - N/ANauru - N/ANauru - N/ANew Zealand - N/ANew Zealand - N/AOman - N/AOman - N/APakistan - N/APakistan - N/APanama - N/APanama - N/APitcairn Is. - N/APitcairn Is. - N/APeru - N/APeru - N/ASpratly Is. - N/ASpratly Is. - N/APhilippines - N/APhilippines - N/APalau - N/APalau - N/APapua New Guinea - N/APapua New Guinea - N/APoland - N/APoland - N/APuerto Rico - N/APuerto Rico - N/ADem. Rep. Korea - N/ADem. Rep. Korea - N/APortugal - N/APortugal - N/AParaguay - N/AParaguay - N/APalestine - N/APalestine - N/AFr. Polynesia - N/AFr. Polynesia - N/AQatar - N/AQatar - N/ARomania - N/ARomania - N/ARussia - N/ARussia - N/ARwanda - N/ARwanda - N/AW. Sahara - N/AW. Sahara - N/ASaudi Arabia - N/ASaudi Arabia - N/AScarborough Reef - N/AScarborough Reef - N/ASudan - N/ASudan - N/AS. Sudan - N/AS. Sudan - N/ASenegal - N/ASenegal - N/ASerranilla Bank - N/ASerranilla Bank - N/ASingapore - N/ASingapore - N/AS. Geo. and S. Sandw. Is. - N/AS. Geo. and S. Sandw. Is. - N/ASaint Helena - N/ASaint Helena - N/ASolomon Is. - N/ASolomon Is. - N/ASierra Leone - N/ASierra Leone - N/AEl Salvador - N/AEl Salvador - N/ASan Marino - N/ASan Marino - N/ASomaliland - N/ASomaliland - N/ASomalia - N/ASomalia - N/ASt. Pierre and Miquelon - N/ASt. Pierre and Miquelon - N/ASerbia - N/ASerbia - N/ASão Tomé and Principe - N/ASão Tomé and Principe - N/ASuriname - N/ASuriname - N/ASlovakia - 1Slovakia - 1Slovenia - N/ASlovenia - N/ASweden - N/ASweden - N/ASwaziland - N/ASwaziland - N/ASint Maarten - N/ASint Maarten - N/ASeychelles - N/ASeychelles - N/ASyria - N/ASyria - N/ATurks and Caicos Is. - N/ATurks and Caicos Is. - N/AChad - N/AChad - N/ATogo - N/ATogo - N/AThailand - N/AThailand - N/ATajikistan - N/ATajikistan - N/ATurkmenistan - N/ATurkmenistan - N/ATimor-Leste - N/ATimor-Leste - N/ATonga - N/ATonga - N/ATrinidad and Tobago - N/ATrinidad and Tobago - N/ATunisia - N/ATunisia - N/ATurkey - N/ATurkey - N/ATuvalu - N/ATuvalu - N/ATaiwan - N/ATaiwan - N/ATanzania - N/ATanzania - N/AUganda - N/AUganda - N/AUkraine - N/AUkraine - N/AU.S. Minor Outlying Is. - N/AU.S. Minor Outlying Is. - N/AUruguay - N/AUruguay - N/AUnited States - 1United States - 1USNB Guantanamo Bay - N/AUSNB Guantanamo Bay - N/AUzbekistan - N/AUzbekistan - N/AVatican - N/AVatican - N/ASt. Vin. and Gren. - N/ASt. Vin. and Gren. - N/AVenezuela - N/AVenezuela - N/ABritish Virgin Is. - N/ABritish Virgin Is. - N/AU.S. Virgin Is. - N/AU.S. Virgin Is. - N/AVietnam - N/AVietnam - N/AVanuatu - N/AVanuatu - N/AWallis and Futuna Is. - N/AWallis and Futuna Is. - N/AAkrotiri - N/AAkrotiri - N/ASamoa - N/ASamoa - N/AYemen - N/AYemen - N/ASouth Africa - N/ASouth Africa - N/AZambia - N/AZambia - N/AZimbabwe - N/AZimbabwe - N/AFrench Guiana - N/AFrench Guiana - N/ARéunion - N/ARéunion - N/A100200300400
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