Institut Pasteur MLST databases and software

This page provides access to Multilocus Sequence Typing (MLST) data for Streptococcus thermophilus isolates. Please see references for more details.

streptococcusMLST@pasteur.fr

The BIGSdb website Policy concerning the platform & data use agreement and the privacy notice of BIGSdb-Pasteur was updated on March 25, 2024. Please consult it before using the platform and the data. If any questions, contact us.

Alleles & profiles database

The typing database contains nomenclature - allele definitions that provide an identifier for every unique allele sequence, and MLST profiles that index each unique combination of alleles with a sequence type (ST).

Isolates database

The isolate database consists of isolate records containing provenance and phenotype information linked to molecular typing information. These records may also include genome assemblies.

Data submission

Before contacting the curators, please download and read carefully the files below:

Submission of data for curation

Template for Streptococcus thermophilus isolates

We appreciate if you can recognize our efforts in the acknowledgments section of your publications:

We thank the Institut Pasteur teams for the curation and maintenance of BIGSdb-Pasteur databases at https://bigsdb.pasteur.fr/.

Curators access

Data Curation is performed on a voluntary basis and is based on a community effort.

Sequences and Profiles

Isolates

Other Information

BIGSdb manual

Primers used for amplification and sequencing (MLST)

Edit on GitLab