Institut Pasteur MLST databases and software

This page provides access to genotypic data for isolates of the Corynebacterium diphtheriae species complex (including C. ulcerans, C. pseudotuberculosis, C. belfantii, C. rouxii and C. silvaticum) based on Multilocus Sequence Typing (MLST), and based on core genome MLST (cgMLST) for C. diphtheriae and C. ulcerans. See references for more details.

Since January 2022, 7-gene MLST alleles and profiles will be defined in this database, as the corresponding PubMLST diphtheria database has been closed.

diphtheriaeMLST@pasteur.fr

Alleles & profiles database

The typing database contains nomenclature - allele definitions that provide an identifier for every unique allele sequence, and MLST profiles that index each unique combination of alleles with a sequence type (ST).

Isolates & genomes database

The isolate database consists of isolate records containing provenance and phenotype information linked to molecular typing information. These records may also include genome assemblies.

Data submission

Before contacting the curators, please download and read carefully the files below:

Submission of data for curation

Infographic

Template for Corynebacterium diphtheriae isolates

Template for Corynebacterium diphtheriae genomes

We appreciate if you can recognize our efforts in the acknowledgments section of your publications:

We thank the Institut Pasteur teams for the curation and maintenance of BIGSdb-Pasteur databases at https://bigsdb.pasteur.fr/.

Curators access

Data Curation is performed on a voluntary basis and is based on a community effort.

Sequences and Profiles

Isolates

Other Information

BIGSdb manual

Primers used for amplification and sequencing (MLST)

Edit on GitLab