Corynebacterium diphtheriae complex
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This page provides access to genotypic data for isolates of the Corynebacterium diphtheriae species complex (including C. ulcerans, C. pseudotuberculosis, C. belfantii, C. rouxii and C. silvaticum) based on Multilocus Sequence Typing (MLST), and based on core genome MLST (cgMLST) for C. diphtheriae and C. ulcerans. See references for more details.

Since January 2022, 7-gene MLST alleles and profiles will be defined in this database, as the corresponding PubMLST diphtheria database has been closed.

diphtheriaeMLST@pasteur.fr

⚠ Maintenance: A BIGSdb-Pasteur maintenance is ongoing until Saturday, July 05th. All services are offline until late in the evening (Central European Time). During this period, the server and API are unavailable. Please note that job submission is not available and all unfinished jobs have been killed. Sorry for any inconvenience. If any questions, contact us

Data access policy note: since January 1st, 2025, registration and authentication are mandatory to access all data curated after this date, either via the web interface or via the application programming interface (API authentication help link). Please contact us if you have any questions.

Links to bigsdb app have been disabled
Alleles & profiles database
The typing database contains nomenclature - allele definitions that provide an identifier for every unique allele sequence, and MLST profiles that index each unique combination of alleles with a sequence type (ST).
Isolates & genomes database
The isolate database consists of isolate records containing provenance and phenotype information linked to molecular typing information. These records may also include genome assemblies.
Data submission
Before contacting the curators, please download and read carefully the files below:
Template for Corynebacterium diphtheriae isolates
Template for Corynebacterium diphtheriae genomes

We appreciate if you can recognize our efforts in the acknowledgments section of your publications:

We thank the Institut Pasteur teams for the curation and maintenance of BIGSdb-Pasteur databases at https://bigsdb.pasteur.fr/.

Curators access
Data Curation is performed on a voluntary basis and is based on a community effort.
Sequences and Profiles
Isolates