| id | id - primary key |
integer |
- |
yes |
6 |
| isolate | MANDATORY: isolate name |
text |
- |
yes |
20 |
| aliases | alternative names for isolate | text (multiple) | - | no | - |
| references | PubMed ids that link to publications that describe or include record | integer (multiple) | - | no | - |
| duplicate_number | To be filled by curators only |
text |
- |
no |
10 |
| species | MANDATORY: Taxonomic designation |
text |
C. belfantii
C. diphtheriae
C. pseudotuberculosis
C. rouxii
C. silvaticum
C. ulcerans
C. ramonii
Other
Unknown
|
yes |
- |
| biovar | biovar |
text |
Belfanti
Equii
Gravis
Intermedius
Mitis
Other
Ovis
Unknown
|
no |
- |
| tox_gene_PCR | Identified virulence gene. Leave blank if unknown |
text |
Positive
Negative
|
no |
- |
| tox_production_Elek | Diphtheria toxin (DT) production (toxigenicity) assay. Typically performed only for tox-positive isolates by PCR. Leave blank if unknown. If the toxigenicity assay was performed using another method, please contact us for update of the template. |
text |
Positive
Negative
|
no |
- |
| isolation_year | year of isolation |
integer |
- |
no |
4 |
| city | city of isolation |
text |
- |
no |
30 |
| country | MANDATORY: Country where strain was isolated. If any doubt, please search terms here:http://insdc.org/country.html |
text |
Afghanistan
Åland Islands
Albania
Algeria
American Samoa
Andorra
Angola
Anguilla
Antarctica
Antigua and Barbuda
Argentina
Armenia
Aruba
Australia
Austria
Azerbaijan
Bahamas
Bahrain
Bangladesh
Barbados
Belarus
Belgium
Belize
Benin
Bermuda
Bhutan
Bolivia
Bonaire, Sint Eustatius and Saba
Bosnia and Herzegovina
Botswana
Bouvet Island
Brazil
British Indian Ocean Territory
British Virgin Islands
Brunei
Bulgaria
Burkina Faso
Burundi
Cambodia
Cameroon
Canada
Cape Verde
Cayman Islands
Central African Republic
Chad
Chile
China
China [Hong Kong]
China [Macao]
Christmas Island
Cocos (Keeling) Islands
Colombia
Comoros
Congo [DRC]
Congo [Republic]
Cook Islands
Costa Rica
Croatia
Cuba
Curaçao
Cyprus
Czech Republic
Denmark
Djibouti
Dominica
Dominican Republic
East Timor
Ecuador
Egypt
El Salvador
Equatorial Guinea
Eritrea
Estonia
Ethiopia
Falkland Islands (Malvinas)
Faroe Islands
Fiji
Finland
France
French Guiana
French Polynesia
French Southern Territories
Gabon
Georgia
Germany
Ghana
Gibraltar
Greece
Greenland
Grenada
Guadeloupe
Guam
Guatemala
Guernsey
Guinea
Guinea-Bissau
Guyana
Haiti
Heard Island and McDonald Islands
Holy See
Honduras
Hungary
Iceland
India
Indonesia
Iran
Iraq
Ireland
Isle of Man
Israel
Italy
Ivory Coast
Jamaica
Japan
Jersey
Jordan
Kazakhstan
Kenya
Kiribati
Kuwait
Kyrgyzstan
Laos
Latvia
Lebanon
Lesotho
Liberia
Libya
Liechtenstein
Lithuania
Luxembourg
Madagascar
Malawi
Malaysia
Maldives
Mali
Malta
Marshall Islands
Martinique
Mauritania
Mauritius
Mayotte
Mexico
Micronesia
Moldova
Monaco
Mongolia
Montenegro
Montserrat
Morocco
Mozambique
Myanmar
Namibia
Nauru
Nepal
New Caledonia
New Zealand
Nicaragua
Niger
Nigeria
Niue
Norfolk Island
North Korea
North Macedonia
Northern Mariana Islands
Norway
Oman
Pakistan
Palau
Palestinian territories
Panama
Papua New Guinea
Paraguay
Peru
Philippines
Pitcairn
Poland
Portugal
Puerto Rico
Qatar
Réunion
Romania
Russia
Russia [Asia]
Russia [Europe]
Rwanda
Saint Barthélemy
Saint Helena
Saint Kitts and Nevis
Saint Lucia
Saint Martin (French Part)
Saint Pierre and Miquelon
Saint Vincent and the Grenadines
Samoa
San Marino
São Tomé and Príncipe
Sark
Saudi Arabia
Senegal
Serbia
Seychelles
Sierra Leone
Singapore
Sint Maarten (Dutch part)
Slovakia
Slovenia
Solomon Islands
Somalia
South Africa
South Georgia and the South Sandwich Islands
South Korea
South Sudan
Spain
Sri Lanka
Sudan
Suriname
Svalbard and Jan Mayen Islands
Swaziland
Sweden
Switzerland
Syria
Taiwan
Tajikistan
Tanzania
Thailand
The Gambia
The Netherlands
Togo
Tokelau
Tonga
Trinidad and Tobago
Tunisia
Turkey
Turkmenistan
Turks and Caicos Islands
Tuvalu
Uganda
UK
UK [England]
UK [Northern Ireland]
UK [Scotland]
UK [Wales]
Ukraine
United Arab Emirates
Uruguay
US Minor Outlying Islands
US Virgin Islands
USA
Uzbekistan
Vanuatu
Venezuela
Vietnam
Wallis and Futuna Islands
Western Sahara
Yemen
Zambia
Zimbabwe
Unknown
|
yes |
- |
| state_or_locality | additional location info (state/region/department/city) |
text |
- |
no |
60 |
| travel_history | MANDATORY: If recent travel from a country distinct from the isolation country |
text |
- |
yes |
30 |
| host | MANDATORY: environment or host |
text |
- |
yes |
30 |
| source | clinical site, etc. |
text |
- |
no |
50 |
| infection_or_disease | kind of infection or disease |
text |
- |
no |
40 |
| other_source_info | Any additional information on the clinical source or disease |
text |
- |
no |
70 |
| resistance_info | Antimicrobial resistance pattern and/or mechanisms |
text |
- |
no |
70 |
| comments | Other comments; if you are submitting data from another lab, the source lab of the isolate or genomic sequence can be indicated here |
text |
- |
no |
1000 |
| accession_number | Preferably a Genbank or RefSeq assembly accession, although NCBI BioSample and BioProject or other accession numbers are accepted |
text |
- |
no |
20 |
| epidemic_cluster | Epidemic clusters |
text |
- |
no |
50 |
| sender | user who sent data, links to users table |
integer |
Click for list of sender ids
|
yes |
4 |
| curator | curator who entered data, links to user table |
integer |
Click for list of curator ids
|
yes |
4 |
| date_entered | date first entered |
date |
- |
yes |
10 |
| datestamp | date last modified |
date |
- |
yes |
10 |
| outbreak_or_sporadic | Outbreak or sporadic |
text |
- |
no |
10 |