Full information on isolate FSL R2-561 (id:9)
Projects
This isolate is a member of the following project:
- Public isolates
- Isolates publicly available for consultation
Provenance/primary metadata
- id
- 9
- isolate
- FSL R2-561
- species
- L. monocytogenes
- sender
- Alexandra Moura
- curator
- Alexandra Moura, Institut Pasteur (E-mail: alexandra.moura@pasteur.fr)
- update history
- 17929 updates show details
- date entered
- 2014-04-08
- datestamp
- 2022-12-29
- continentold
- Unknown
- country
- Unknown
- source
- Unknown
- source description
- Unknown
- phylogenetic lineage
- II
- serotype
- n.d.
- clonal complex
- CC9
- sublineage
- SL9
- cgmlst type
- CT603
- accession number
- NC_017546
Publications (3)
- Maury MM, Tsai YH, Charlier C, Touchon M, Chenal-Francisque V, Leclercq A, Criscuolo A, Gaultier C, Roussel S, Brisabois A, Disson O, Rocha EPC, Brisse S, Lecuit M (2016). Uncovering Listeria monocytogenes hypervirulence by harnessing its biodiversity. Nat Genet 48:308-313
- Moura A, Criscuolo A, Pouseele H, Maury MM, Leclercq A, Tarr C, Björkman JT, Dallman T, Reimer A, Enouf V, Larsonneur E, Carleton H, Bracq-Dieye H, Katz LS, Jones L, Touchon M, Tourdjman M, Walker M, Stroika S, Cantinelli T, Chenal-Francisque V, Kucerova Z, Rocha EP, Nadon C, Grant K, Nielsen EM, Pot B, Gerner-Smidt P, Lecuit M, Brisse S (2016). Whole genome-based population biology and epidemiological surveillance of Listeria monocytogenes. Nat Microbiol 2:16185
- den Bakker HC, Desjardins CA, Griggs AD, Peters JE, Zeng Q, Young SK, Kodira CD, Yandava C, Hepburn TA, Haas BJ, Birren BW, Wiedmann M (2013). Evolutionary dynamics of the accessory genome of Listeria monocytogenes. PLoS One 8:e67511
Similar isolates (determined by classification schemes)
Some groups only contain this isolate. Show single groups
Experimental schemes are subject to change and are not a stable part of the nomenclature.
| Classification scheme | Underlying scheme | Clustering method | Mismatch threshold | Status | Group |
|---|---|---|---|---|---|
| auto_cgclust_30 | cgMLST1748 | Single-linkage | 30 | experimental | 60 (51 isolates) |
| auto_cgclust_150 | cgMLST1748 | Single-linkage | 150 | experimental | 314 (63 isolates) |
| auto_cgclust_500 | cgMLST1748 | Single-linkage | 500 | experimental | 7 (71 isolates) |
| auto_cgclust_1000 | cgMLST1748 | Single-linkage | 1000 | experimental | 7 (76 isolates) |
| auto_cgclust_1500 | cgMLST1748 | Single-linkage | 1500 | experimental | 2 (690 isolates) |
| auto_cgclust_4 | cgMLST1748 | Single-linkage | 4 | experimental | 7 (1 isolate) |
| auto_cgclust_7 | cgMLST1748 | Single-linkage | 7 | experimental | 7 (1 isolate) |
| auto_cgclust_10 | cgMLST1748 | Single-linkage | 10 | experimental | 7 (1 isolate) |
| auto_cgclust_30 | cgMLST1748 | Single-linkage | 30 | experimental | 60 (51 isolates) |
| auto_cgclust_150 | cgMLST1748 | Single-linkage | 150 | experimental | 314 (63 isolates) |
| auto_cgclust_500 | cgMLST1748 | Single-linkage | 500 | experimental | 7 (71 isolates) |
| auto_cgclust_1000 | cgMLST1748 | Single-linkage | 1000 | experimental | 7 (76 isolates) |
| auto_cgclust_1500 | cgMLST1748 | Single-linkage | 1500 | experimental | 2 (690 isolates) |
Schemes and loci
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