Full information on isolate CLIP 2005/00704 (id:5)
Projects
This isolate is a member of the following project:
- Public isolates
- Isolates publicly available for consultation
Provenance/primary metadata
- id
- 5
- isolate
- CLIP 2005/00704
- species
- L. monocytogenes
- sender
- Alexandra Moura, Institut Pasteur
- curator
- Auto Tagger
- update history
- 17965 updates show details
- date entered
- 2014-04-08
- datestamp
- 2022-09-23
- isolation year
- 2005
- continentold
- Europe
- country
- France
- continent
- Europe
- region
- dpt92
- source
- Human
- infection
- MN
- source description
- MN
- source lab
- Institut Pasteur, Paris, France
- phylogenetic lineage
- I
- serotype
- IIb
- clonal complex
- CC5
- sublineage
- SL5
- cgmlst type
- CT125
- accession number
- ERR1100912
Publications (2)
- Maury MM, Tsai YH, Charlier C, Touchon M, Chenal-Francisque V, Leclercq A, Criscuolo A, Gaultier C, Roussel S, Brisabois A, Disson O, Rocha EPC, Brisse S, Lecuit M (2016). Uncovering Listeria monocytogenes hypervirulence by harnessing its biodiversity. Nat Genet 48:308-313
- Moura A, Criscuolo A, Pouseele H, Maury MM, Leclercq A, Tarr C, Björkman JT, Dallman T, Reimer A, Enouf V, Larsonneur E, Carleton H, Bracq-Dieye H, Katz LS, Jones L, Touchon M, Tourdjman M, Walker M, Stroika S, Cantinelli T, Chenal-Francisque V, Kucerova Z, Rocha EP, Nadon C, Grant K, Nielsen EM, Pot B, Gerner-Smidt P, Lecuit M, Brisse S (2016). Whole genome-based population biology and epidemiological surveillance of Listeria monocytogenes. Nat Microbiol 2:16185
Similar isolates (determined by classification schemes)
Some groups only contain this isolate. Show single groups
Experimental schemes are subject to change and are not a stable part of the nomenclature.
| Classification scheme | Underlying scheme | Clustering method | Mismatch threshold | Status | Group |
|---|---|---|---|---|---|
| auto_cgclust_10 | cgMLST1748 | Single-linkage | 10 | experimental | 1220 (6 isolates) |
| auto_cgclust_30 | cgMLST1748 | Single-linkage | 30 | experimental | 4 (11 isolates) |
| auto_cgclust_150 | cgMLST1748 | Single-linkage | 150 | experimental | 311 (43 isolates) |
| auto_cgclust_500 | cgMLST1748 | Single-linkage | 500 | experimental | 4 (43 isolates) |
| auto_cgclust_1000 | cgMLST1748 | Single-linkage | 1000 | experimental | 4 (43 isolates) |
| auto_cgclust_1500 | cgMLST1748 | Single-linkage | 1500 | experimental | 1 (675 isolates) |
| auto_cgclust_4 | cgMLST1748 | Single-linkage | 4 | experimental | 4 (1 isolate) |
| auto_cgclust_7 | cgMLST1748 | Single-linkage | 7 | experimental | 4 (1 isolate) |
| auto_cgclust_10 | cgMLST1748 | Single-linkage | 10 | experimental | 1220 (6 isolates) |
| auto_cgclust_30 | cgMLST1748 | Single-linkage | 30 | experimental | 4 (11 isolates) |
| auto_cgclust_150 | cgMLST1748 | Single-linkage | 150 | experimental | 311 (43 isolates) |
| auto_cgclust_500 | cgMLST1748 | Single-linkage | 500 | experimental | 4 (43 isolates) |
| auto_cgclust_1000 | cgMLST1748 | Single-linkage | 1000 | experimental | 4 (43 isolates) |
| auto_cgclust_1500 | cgMLST1748 | Single-linkage | 1500 | experimental | 1 (675 isolates) |
Schemes and loci
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