Full information on isolate LM80459 (id:4)
Projects
This isolate is a member of the following project:
- Public isolates
- Isolates publicly available for consultation
Provenance/primary metadata
- id
- 4
- isolate
- LM80459
- species
- L. monocytogenes
- sender
- Alexandra Moura, Institut Pasteur
- curator
- Auto Tagger
- update history
- 17958 updates show details
- date entered
- 2014-04-08
- datestamp
- 2022-10-13
- isolation year
- 1999
- continentold
- Europe
- country
- France
- continent
- Europe
- outbreak info
- Outbreak 1999
- source
- Human
- source description
- BACT
- source lab
- Institut Pasteur, Paris, France
- phylogenetic lineage
- I
- serotype
- IVb; 4b
- clonal complex
- CC4
- sublineage
- SL4
- cgmlst type
- CT188
- accession number
- NC_012488
Publications (2)
- Maury MM, Tsai YH, Charlier C, Touchon M, Chenal-Francisque V, Leclercq A, Criscuolo A, Gaultier C, Roussel S, Brisabois A, Disson O, Rocha EPC, Brisse S, Lecuit M (2016). Uncovering Listeria monocytogenes hypervirulence by harnessing its biodiversity. Nat Genet 48:308-313
- Moura A, Criscuolo A, Pouseele H, Maury MM, Leclercq A, Tarr C, Björkman JT, Dallman T, Reimer A, Enouf V, Larsonneur E, Carleton H, Bracq-Dieye H, Katz LS, Jones L, Touchon M, Tourdjman M, Walker M, Stroika S, Cantinelli T, Chenal-Francisque V, Kucerova Z, Rocha EP, Nadon C, Grant K, Nielsen EM, Pot B, Gerner-Smidt P, Lecuit M, Brisse S (2016). Whole genome-based population biology and epidemiological surveillance of Listeria monocytogenes. Nat Microbiol 2:16185
Similar isolates (determined by classification schemes)
Some groups only contain this isolate. Show single groups
Experimental schemes are subject to change and are not a stable part of the nomenclature.
| Classification scheme | Underlying scheme | Clustering method | Mismatch threshold | Status | Group |
|---|---|---|---|---|---|
| auto_cgclust_30 | cgMLST1748 | Single-linkage | 30 | experimental | 28 (21 isolates) |
| auto_cgclust_150 | cgMLST1748 | Single-linkage | 150 | experimental | 310 (22 isolates) |
| auto_cgclust_500 | cgMLST1748 | Single-linkage | 500 | experimental | 3 (46 isolates) |
| auto_cgclust_1000 | cgMLST1748 | Single-linkage | 1000 | experimental | 1 (625 isolates) |
| auto_cgclust_1500 | cgMLST1748 | Single-linkage | 1500 | experimental | 1 (675 isolates) |
| auto_cgclust_4 | cgMLST1748 | Single-linkage | 4 | experimental | 3 (1 isolate) |
| auto_cgclust_7 | cgMLST1748 | Single-linkage | 7 | experimental | 3 (1 isolate) |
| auto_cgclust_10 | cgMLST1748 | Single-linkage | 10 | experimental | 3 (1 isolate) |
| auto_cgclust_30 | cgMLST1748 | Single-linkage | 30 | experimental | 28 (21 isolates) |
| auto_cgclust_150 | cgMLST1748 | Single-linkage | 150 | experimental | 310 (22 isolates) |
| auto_cgclust_500 | cgMLST1748 | Single-linkage | 500 | experimental | 3 (46 isolates) |
| auto_cgclust_1000 | cgMLST1748 | Single-linkage | 1000 | experimental | 1 (625 isolates) |
| auto_cgclust_1500 | cgMLST1748 | Single-linkage | 1500 | experimental | 1 (675 isolates) |
Schemes and loci
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