Full information on isolate 176 (id:27827)
Projects
This isolate is a member of the following project:
- Public isolates
- Isolates publicly available for consultation
Provenance/primary metadata
- id
- 27827
- isolate
- 176
- species
- L. monocytogenes
- sender
- Monika Kurpas, Medical University of Gdańsk, Gdańsk, Poland
- curator
- Auto Tagger
- update history
- 26 updates show details
- date entered
- 2018-04-22
- datestamp
- 2023-12-19
- isolation year
- 2015
- continentold
- Europe
- country
- Poland
- continent
- Europe
- region
- małopolskie
- source
- Production environment
- source lab
- National Veterinary Research Institute, Pulawy, Poland
- phylogenetic lineage
- I
- clonal complex
- CC5
- sublineage
- SL5
- cgmlst type
- CT2050
Publication (1)
- Kurpas M, Osek J, Moura A, Leclercq A, Lecuit M, Wieczorek K (2020). Genomic Characterization of Listeria monocytogenes Isolated From Ready-to-Eat Meat and Meat Processing Environments in Poland. Front Microbiol 11:1412
Sequence bin
- contigs
- 53
- total length
- 3,107,292 bp
- max length
- 1,016,087 bp
- mean length
- 58,629 bp
- N50
- 508,227
- L50
- 3
- N90
- 97,921
- L90
- 6
- N95
- 39,280
- L95
- 9
- %GC
- 37.87
- Ns
- 0
- gaps
- 0
- loci tagged
- 1,847
Similar isolates (determined by classification schemes)
Some groups only contain this isolate. Show single groups
Experimental schemes are subject to change and are not a stable part of the nomenclature.
| Classification scheme | Underlying scheme | Clustering method | Mismatch threshold | Status | Group |
|---|---|---|---|---|---|
| auto_cgclust_7 | cgMLST1748 | Single-linkage | 7 | experimental | 1232 (4 isolates) |
| auto_cgclust_10 | cgMLST1748 | Single-linkage | 10 | experimental | 1220 (6 isolates) |
| auto_cgclust_30 | cgMLST1748 | Single-linkage | 30 | experimental | 4 (11 isolates) |
| auto_cgclust_150 | cgMLST1748 | Single-linkage | 150 | experimental | 311 (43 isolates) |
| auto_cgclust_500 | cgMLST1748 | Single-linkage | 500 | experimental | 4 (43 isolates) |
| auto_cgclust_1000 | cgMLST1748 | Single-linkage | 1000 | experimental | 4 (43 isolates) |
| auto_cgclust_1500 | cgMLST1748 | Single-linkage | 1500 | experimental | 1 (675 isolates) |
| auto_cgclust_4 | cgMLST1748 | Single-linkage | 4 | experimental | 1359 (1 isolate) |
| auto_cgclust_7 | cgMLST1748 | Single-linkage | 7 | experimental | 1232 (4 isolates) |
| auto_cgclust_10 | cgMLST1748 | Single-linkage | 10 | experimental | 1220 (6 isolates) |
| auto_cgclust_30 | cgMLST1748 | Single-linkage | 30 | experimental | 4 (11 isolates) |
| auto_cgclust_150 | cgMLST1748 | Single-linkage | 150 | experimental | 311 (43 isolates) |
| auto_cgclust_500 | cgMLST1748 | Single-linkage | 500 | experimental | 4 (43 isolates) |
| auto_cgclust_1000 | cgMLST1748 | Single-linkage | 1000 | experimental | 4 (43 isolates) |
| auto_cgclust_1500 | cgMLST1748 | Single-linkage | 1500 | experimental | 1 (675 isolates) |
Schemes and loci
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