Full information on isolate 163 (id:27822)
Projects
This isolate is a member of the following project:
- Public isolates
- Isolates publicly available for consultation
Provenance/primary metadata
- id
- 27822
- isolate
- 163
- species
- L. monocytogenes
- sender
- Monika Kurpas, Medical University of Gdańsk, Gdańsk, Poland
- curator
- Auto Tagger
- update history
- 28 updates show details
- date entered
- 2018-04-22
- datestamp
- 2023-12-22
- isolation year
- 2015
- continentold
- Europe
- country
- Poland
- continent
- Europe
- region
- podkarpackie
- source
- Food
- source lab
- National Veterinary Research Institute, Pulawy, Poland
- phylogenetic lineage
- I
- clonal complex
- CC6
- sublineage
- SL6
- cgmlst type
- CT1955
Publication (1)
- Kurpas M, Osek J, Moura A, Leclercq A, Lecuit M, Wieczorek K (2020). Genomic Characterization of Listeria monocytogenes Isolated From Ready-to-Eat Meat and Meat Processing Environments in Poland. Front Microbiol 11:1412
Sequence bin
- contigs
- 43
- total length
- 2,929,747 bp
- max length
- 986,358 bp
- mean length
- 68,134 bp
- N50
- 291,539
- L50
- 3
- N90
- 135,843
- L90
- 8
- N95
- 97,943
- L95
- 9
- %GC
- 37.90
- Ns
- 0
- gaps
- 0
- loci tagged
- 1,842
Similar isolates (determined by classification schemes)
Experimental schemes are subject to change and are not a stable part of the nomenclature.
| Classification scheme | Underlying scheme | Clustering method | Mismatch threshold | Status | Group |
|---|---|---|---|---|---|
| auto_cgclust_4 | cgMLST1748 | Single-linkage | 4 | experimental | 3449 (2 isolates) |
| auto_cgclust_7 | cgMLST1748 | Single-linkage | 7 | experimental | 3002 (2 isolates) |
| auto_cgclust_10 | cgMLST1748 | Single-linkage | 10 | experimental | 2664 (2 isolates) |
| auto_cgclust_30 | cgMLST1748 | Single-linkage | 30 | experimental | 31 (101 isolates) |
| auto_cgclust_150 | cgMLST1748 | Single-linkage | 150 | experimental | 312 (109 isolates) |
| auto_cgclust_500 | cgMLST1748 | Single-linkage | 500 | experimental | 5 (109 isolates) |
| auto_cgclust_1000 | cgMLST1748 | Single-linkage | 1000 | experimental | 1 (625 isolates) |
| auto_cgclust_1500 | cgMLST1748 | Single-linkage | 1500 | experimental | 1 (675 isolates) |
| auto_cgclust_4 | cgMLST1748 | Single-linkage | 4 | experimental | 3449 (2 isolates) |
| auto_cgclust_7 | cgMLST1748 | Single-linkage | 7 | experimental | 3002 (2 isolates) |
| auto_cgclust_10 | cgMLST1748 | Single-linkage | 10 | experimental | 2664 (2 isolates) |
| auto_cgclust_30 | cgMLST1748 | Single-linkage | 30 | experimental | 31 (101 isolates) |
| auto_cgclust_150 | cgMLST1748 | Single-linkage | 150 | experimental | 312 (109 isolates) |
| auto_cgclust_500 | cgMLST1748 | Single-linkage | 500 | experimental | 5 (109 isolates) |
| auto_cgclust_1000 | cgMLST1748 | Single-linkage | 1000 | experimental | 1 (625 isolates) |
| auto_cgclust_1500 | cgMLST1748 | Single-linkage | 1500 | experimental | 1 (675 isolates) |
Schemes and loci
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