Full information on isolate 539 (id:27801)
Projects
This isolate is a member of the following project:
- Public isolates
- Isolates publicly available for consultation
Provenance/primary metadata
- id
- 27801
- isolate
- 539
- alias
- CLIP 2018/00368
- species
- L. monocytogenes
- sender
- Monika Kurpas, Medical University of Gdańsk, Gdańsk, Poland
- curator
- Auto Tagger
- update history
- 31 updates show details
- date entered
- 2018-04-20
- datestamp
- 2023-12-19
- isolation year
- 2016
- continentold
- Europe
- country
- Poland
- continent
- Europe
- source
- Food
- source lab
- National Veterinary Research Institute, Pulawy, Poland
- phylogenetic lineage
- I
- clonal complex
- CC2
- sublineage
- SL2
- cgmlst type
- CT4382
Publication (1)
- Kurpas M, Osek J, Moura A, Leclercq A, Lecuit M, Wieczorek K (2020). Genomic Characterization of Listeria monocytogenes Isolated From Ready-to-Eat Meat and Meat Processing Environments in Poland. Front Microbiol 11:1412
Sequence bin
- contigs
- 78
- total length
- 3,046,819 bp
- max length
- 426,788 bp
- mean length
- 39,062 bp
- N50
- 157,151
- L50
- 7
- N90
- 75,103
- L90
- 18
- N95
- 31,392
- L95
- 21
- %GC
- 37.85
- Ns
- 0
- gaps
- 0
- loci tagged
- 1,867
Schemes and loci
Navigate and select schemes within tree to display allele designations
Tools
Export:
Analysis: