Full information on isolate F6900 (id:21)

Projects

This isolate is a member of the following project:

Public isolates
Isolates publicly available for consultation

Provenance/primary metadata

id
21
isolate
F6900
species
L. monocytogenes
sender
Alexandra Moura, Institut Pasteur
curator
Auto Tagger
update history
17968 updates show details
date entered
2014-04-08
datestamp
2022-09-01
isolation year
1989
continentold
North America
country
USA
continent
North America
source
Human
source description
Unknown
other source info
linked to the consumption of processed meat.
phylogenetic lineage
II
serotype
IIa; 1/2a
clonal complex
CC11
sublineage
SL11
cgmlst type
CT948
accession number
GCA_000168615.1

Publications (3)

  • Maury MM, Tsai YH, Charlier C, Touchon M, Chenal-Francisque V, Leclercq A, Criscuolo A, Gaultier C, Roussel S, Brisabois A, Disson O, Rocha EPC, Brisse S, Lecuit M (2016). Uncovering Listeria monocytogenes hypervirulence by harnessing its biodiversity. Nat Genet 48:308-313
  • Moura A, Criscuolo A, Pouseele H, Maury MM, Leclercq A, Tarr C, Björkman JT, Dallman T, Reimer A, Enouf V, Larsonneur E, Carleton H, Bracq-Dieye H, Katz LS, Jones L, Touchon M, Tourdjman M, Walker M, Stroika S, Cantinelli T, Chenal-Francisque V, Kucerova Z, Rocha EP, Nadon C, Grant K, Nielsen EM, Pot B, Gerner-Smidt P, Lecuit M, Brisse S (2016). Whole genome-based population biology and epidemiological surveillance of Listeria monocytogenes. Nat Microbiol 2:16185
  • Orsi RH, Borowsky ML, Lauer P, Young SK, Nusbaum C, Galagan JE, Birren BW, Ivy RA, Sun Q, Graves LM, Swaminathan B, Wiedmann M (2008). Short-term genome evolution of Listeria monocytogenes in a non-controlled environment. BMC Genomics 9:539

Sequence bin

contigs
1
length
2,970,820 bp
%GC
37.76
Ns
2201
gaps
23
loci tagged
597

Show sequence bin

Analysis

rMLST species identification

RankTaxonTaxonomySupportMatches
SPECIES Listeria monocytogenes Bacillota > Bacilli > Bacillales > Listeriaceae > Listeria > Listeria monocytogenes 100%

Analysis performed: 2024-04-10

Schemes and loci

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