Full information on isolate F2365 (id:2)
Projects
This isolate is a member of the following project:
- Public isolates
- Isolates publicly available for consultation
Provenance/primary metadata
- id
- 2
- isolate
- F2365
- alias
- FSL J1-110
- species
- L. monocytogenes
- sender
- Alexandra Moura
- curator
- Alexandra Moura, Institut Pasteur (E-mail: alexandra.moura@pasteur.fr)
- update history
- 18196 updates show details
- date entered
- 2014-04-08
- datestamp
- 2023-12-21
- isolation year
- 1985
- continentold
- North America
- country
- USA
- continent
- North America
- outbreak info
- Jalisco cheese outbreak, California 1985
- source
- Food
- source description
- Cheese
- phylogenetic lineage
- I
- serotype
- IVb; 4b
- clonal complex
- CC1
- sublineage
- SL1
- cgmlst type
- CT304
- accession number
- NC_002973; SRR2229351
Publications (3)
- Maury MM, Tsai YH, Charlier C, Touchon M, Chenal-Francisque V, Leclercq A, Criscuolo A, Gaultier C, Roussel S, Brisabois A, Disson O, Rocha EPC, Brisse S, Lecuit M (2016). Uncovering Listeria monocytogenes hypervirulence by harnessing its biodiversity. Nat Genet 48:308-313
- Moura A, Criscuolo A, Pouseele H, Maury MM, Leclercq A, Tarr C, Björkman JT, Dallman T, Reimer A, Enouf V, Larsonneur E, Carleton H, Bracq-Dieye H, Katz LS, Jones L, Touchon M, Tourdjman M, Walker M, Stroika S, Cantinelli T, Chenal-Francisque V, Kucerova Z, Rocha EP, Nadon C, Grant K, Nielsen EM, Pot B, Gerner-Smidt P, Lecuit M, Brisse S (2016). Whole genome-based population biology and epidemiological surveillance of Listeria monocytogenes. Nat Microbiol 2:16185
- Nelson KE, Fouts DE, Mongodin EF, Ravel J, DeBoy RT, Kolonay JF, Rasko DA, Angiuoli SV, Gill SR, Paulsen IT, Peterson J, White O, Nelson WC, Nierman W, Beanan MJ, Brinkac LM, Daugherty SC, Dodson RJ, Durkin AS, Madupu R, Haft DH, Selengut J, Van Aken S, Khouri H, Fedorova N, Forberger H, Tran B, Kathariou S, Wonderling LD, Uhlich GA, Bayles DO, Luchansky JB, Fraser CM (2004). Whole genome comparisons of serotype 4b and 1/2a strains of the food-borne pathogen Listeria monocytogenes reveal new insights into the core genome components of this species. Nucleic Acids Res 32:2386-95
Similar isolates (determined by classification schemes)
Some groups only contain this isolate. Show single groups
Experimental schemes are subject to change and are not a stable part of the nomenclature.
| Classification scheme | Underlying scheme | Clustering method | Mismatch threshold | Status | Group |
|---|---|---|---|---|---|
| auto_cgclust_30 | cgMLST1748 | Single-linkage | 30 | experimental | 82 (147 isolates) |
| auto_cgclust_150 | cgMLST1748 | Single-linkage | 150 | experimental | 308 (150 isolates) |
| auto_cgclust_500 | cgMLST1748 | Single-linkage | 500 | experimental | 1 (150 isolates) |
| auto_cgclust_1000 | cgMLST1748 | Single-linkage | 1000 | experimental | 1 (625 isolates) |
| auto_cgclust_1500 | cgMLST1748 | Single-linkage | 1500 | experimental | 1 (675 isolates) |
| auto_cgclust_4 | cgMLST1748 | Single-linkage | 4 | experimental | 1 (1 isolate) |
| auto_cgclust_7 | cgMLST1748 | Single-linkage | 7 | experimental | 1 (1 isolate) |
| auto_cgclust_10 | cgMLST1748 | Single-linkage | 10 | experimental | 1 (1 isolate) |
| auto_cgclust_30 | cgMLST1748 | Single-linkage | 30 | experimental | 82 (147 isolates) |
| auto_cgclust_150 | cgMLST1748 | Single-linkage | 150 | experimental | 308 (150 isolates) |
| auto_cgclust_500 | cgMLST1748 | Single-linkage | 500 | experimental | 1 (150 isolates) |
| auto_cgclust_1000 | cgMLST1748 | Single-linkage | 1000 | experimental | 1 (625 isolates) |
| auto_cgclust_1500 | cgMLST1748 | Single-linkage | 1500 | experimental | 1 (675 isolates) |
Schemes and loci
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