Full information on isolate J0161 (id:11)
Projects
This isolate is a member of the following project:
- Public isolates
- Isolates publicly available for consultation
Provenance/primary metadata
- id
- 11
- isolate
- J0161
- species
- L. monocytogenes
- sender
- Alexandra Moura, Institut Pasteur
- curator
- Auto Tagger
- update history
- 17980 updates show details
- date entered
- 2014-04-08
- datestamp
- 2022-09-01
- isolation year
- 2000
- continentold
- North America
- country
- USA
- continent
- North America
- outbreak info
- Outbreak 2000
- source
- Human
- source description
- Unknown
- phylogenetic lineage
- II
- serotype
- IIa; 1/2a
- clonal complex
- CC11
- sublineage
- SL11
- cgmlst type
- CT948
- accession number
- NC_017545
Publications (3)
- Maury MM, Tsai YH, Charlier C, Touchon M, Chenal-Francisque V, Leclercq A, Criscuolo A, Gaultier C, Roussel S, Brisabois A, Disson O, Rocha EPC, Brisse S, Lecuit M (2016). Uncovering Listeria monocytogenes hypervirulence by harnessing its biodiversity. Nat Genet 48:308-313
- Moura A, Criscuolo A, Pouseele H, Maury MM, Leclercq A, Tarr C, Björkman JT, Dallman T, Reimer A, Enouf V, Larsonneur E, Carleton H, Bracq-Dieye H, Katz LS, Jones L, Touchon M, Tourdjman M, Walker M, Stroika S, Cantinelli T, Chenal-Francisque V, Kucerova Z, Rocha EP, Nadon C, Grant K, Nielsen EM, Pot B, Gerner-Smidt P, Lecuit M, Brisse S (2016). Whole genome-based population biology and epidemiological surveillance of Listeria monocytogenes. Nat Microbiol 2:16185
- Orsi RH, Borowsky ML, Lauer P, Young SK, Nusbaum C, Galagan JE, Birren BW, Ivy RA, Sun Q, Graves LM, Swaminathan B, Wiedmann M (2008). Short-term genome evolution of Listeria monocytogenes in a non-controlled environment. BMC Genomics 9:539
Similar isolates (determined by classification schemes)
Experimental schemes are subject to change and are not a stable part of the nomenclature.
| Classification scheme | Underlying scheme | Clustering method | Mismatch threshold | Status | Group |
|---|---|---|---|---|---|
| auto_cgclust_4 | cgMLST1748 | Single-linkage | 4 | experimental | 486 (2 isolates) |
| auto_cgclust_7 | cgMLST1748 | Single-linkage | 7 | experimental | 453 (3 isolates) |
| auto_cgclust_10 | cgMLST1748 | Single-linkage | 10 | experimental | 430 (3 isolates) |
| auto_cgclust_30 | cgMLST1748 | Single-linkage | 30 | experimental | 17 (6 isolates) |
| auto_cgclust_150 | cgMLST1748 | Single-linkage | 150 | experimental | 322 (6 isolates) |
| auto_cgclust_500 | cgMLST1748 | Single-linkage | 500 | experimental | 40 (33 isolates) |
| auto_cgclust_1000 | cgMLST1748 | Single-linkage | 1000 | experimental | 9 (160 isolates) |
| auto_cgclust_1500 | cgMLST1748 | Single-linkage | 1500 | experimental | 2 (643 isolates) |
| auto_cgclust_4 | cgMLST1748 | Single-linkage | 4 | experimental | 486 (2 isolates) |
| auto_cgclust_7 | cgMLST1748 | Single-linkage | 7 | experimental | 453 (3 isolates) |
| auto_cgclust_10 | cgMLST1748 | Single-linkage | 10 | experimental | 430 (3 isolates) |
| auto_cgclust_30 | cgMLST1748 | Single-linkage | 30 | experimental | 17 (6 isolates) |
| auto_cgclust_150 | cgMLST1748 | Single-linkage | 150 | experimental | 322 (6 isolates) |
| auto_cgclust_500 | cgMLST1748 | Single-linkage | 500 | experimental | 40 (33 isolates) |
| auto_cgclust_1000 | cgMLST1748 | Single-linkage | 1000 | experimental | 9 (160 isolates) |
| auto_cgclust_1500 | cgMLST1748 | Single-linkage | 1500 | experimental | 2 (643 isolates) |
Schemes and loci
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