Full information on isolate EGD-e (id:1)
Projects
This isolate is a member of the following project:
- Public isolates
- Isolates publicly available for consultation
Provenance/primary metadata
- id
- 1
- isolate
- EGD-e
- species
- L. monocytogenes
- sender
- Alexandra Moura
- curator
- Alexandra Moura, Institut Pasteur (E-mail: alexandra.moura@pasteur.fr)
- update history
- 10863 updates show details
- date entered
- 2014-04-08
- datestamp
- 2022-12-29
- isolation year
- 1960
- continentold
- Europe
- country
- Unknown
- source
- Unknown
- source description
- Unknown
- source lab
- Institut Pasteur, Paris, France
- phylogenetic lineage
- II
- serotype
- 1/2a
- clonal complex
- CC9
- sublineage
- SL9
- cgmlst type
- CT637
- accession number
- NC_003210
Publications (3)
- Glaser P, Frangeul L, Buchrieser C, Rusniok C, Amend A, Baquero F, Berche P, Bloecker H, Brandt P, Chakraborty T, Charbit A, Chetouani F, Couvé E, de Daruvar A, Dehoux P, Domann E, Domínguez-Bernal G, Duchaud E, Durant L, Dussurget O, Entian KD, Fsihi H, García-del Portillo F, Garrido P, Gautier L, Goebel W, Gómez-López N, Hain T, Hauf J, Jackson D, Jones LM, Kaerst U, Kreft J, Kuhn M, Kunst F, Kurapkat G, Madueno E, Maitournam A, Vicente JM, Ng E, Nedjari H, Nordsiek G, Novella S, de Pablos B, Pérez-Diaz JC, Purcell R, Remmel B, Rose M, Schlueter T, Simoes N, Tierrez A, Vázquez-Boland JA, Voss H, Wehland J, Cossart P (2001). Comparative genomics of Listeria species. Science 294:849-52
- Maury MM, Tsai YH, Charlier C, Touchon M, Chenal-Francisque V, Leclercq A, Criscuolo A, Gaultier C, Roussel S, Brisabois A, Disson O, Rocha EPC, Brisse S, Lecuit M (2016). Uncovering Listeria monocytogenes hypervirulence by harnessing its biodiversity. Nat Genet 48:308-313
- Moura A, Criscuolo A, Pouseele H, Maury MM, Leclercq A, Tarr C, Björkman JT, Dallman T, Reimer A, Enouf V, Larsonneur E, Carleton H, Bracq-Dieye H, Katz LS, Jones L, Touchon M, Tourdjman M, Walker M, Stroika S, Cantinelli T, Chenal-Francisque V, Kucerova Z, Rocha EP, Nadon C, Grant K, Nielsen EM, Pot B, Gerner-Smidt P, Lecuit M, Brisse S (2016). Whole genome-based population biology and epidemiological surveillance of Listeria monocytogenes. Nat Microbiol 2:16185
Similar isolates (determined by classification schemes)
Some groups only contain this isolate. Show single groups
Experimental schemes are subject to change and are not a stable part of the nomenclature.
| Classification scheme | Underlying scheme | Clustering method | Mismatch threshold | Status | Group |
|---|---|---|---|---|---|
| auto_cgclust_150 | cgMLST1748 | Single-linkage | 150 | experimental | 314 (61 isolates) |
| auto_cgclust_500 | cgMLST1748 | Single-linkage | 500 | experimental | 7 (69 isolates) |
| auto_cgclust_1000 | cgMLST1748 | Single-linkage | 1000 | experimental | 7 (71 isolates) |
| auto_cgclust_1500 | cgMLST1748 | Single-linkage | 1500 | experimental | 2 (643 isolates) |
| auto_cgclust_4 | cgMLST1748 | Single-linkage | 4 | experimental | 8732 (1 isolate) |
| auto_cgclust_7 | cgMLST1748 | Single-linkage | 7 | experimental | 6989 (1 isolate) |
| auto_cgclust_10 | cgMLST1748 | Single-linkage | 10 | experimental | 5705 (1 isolate) |
| auto_cgclust_30 | cgMLST1748 | Single-linkage | 30 | experimental | 1271 (1 isolate) |
| auto_cgclust_150 | cgMLST1748 | Single-linkage | 150 | experimental | 314 (61 isolates) |
| auto_cgclust_500 | cgMLST1748 | Single-linkage | 500 | experimental | 7 (69 isolates) |
| auto_cgclust_1000 | cgMLST1748 | Single-linkage | 1000 | experimental | 7 (71 isolates) |
| auto_cgclust_1500 | cgMLST1748 | Single-linkage | 1500 | experimental | 2 (643 isolates) |
Schemes and loci
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