Search or browse database

Enter search criteria or leave blank to browse all records. Modify form parameters to filter or enter a list of values.

Isolate provenance/primary metadata fields

Filters

Publication:
Project:
MLST profiles:
ST (MLST):
CC (MLST):
Lineage (MLST):
cgMLST1748 profiles:
PCR-serogroup prof…
Profile id (PCR-se…
Serogroup (PCR-ser…
cgMLST1748 v2 prof…
Profile id v2 (cgM…
Include old record versions

Add filter: Add

Display/sort options

Order by:
Display: records per page

Action Reset

Modify form parameters

Click to add or remove additional query terms:

Provenance fields
Allele designations/scheme field values
Allele designation counts
Allele designation status
Sequence bin
Assembly checks
Tagged sequence counts
Tagged sequence status
Attribute values list
Filters

Isolate count

0 [month]

Genome count

0 [month]

2 records returned. Click the hyperlinks for detailed information.

Isolate fields																			MLST										PCR-serogroup	cgMLST1748_v2
id	isolate	aliases	species	country	outbreak info	source description	sample type	other source info	source lab	phylogenetic lineage	serotype	clonal complex	sublineage	cgmlst type	subcluster 4ad	comments	accession number	duplicate number	abcZ	bglA	cat	dapE	dat	ldh	lhkA	ST	CC	Lineage	serogroup	profile id v2	LINcode	Lineage	Sublineage	Genetic cluster
51	CLIP 2007/01014		L. monocytogenes	Unknown		Unknown			Institut Pasteur, Paris, France	II	IIa	CC121	SL121	CT930		Non-haemolytic	ERR1100933		7	6	8	8	6	37	1	121	CC121	II	IIa	3844 [+1 more] 51	0_0_0_19_1_1_0_69_0_0_0_0	LII	SL121	GC7713
89	CLIP 1989/13656	LM13656	L. monocytogenes	Unknown		Unknown			Institut Pasteur, Paris, France	I	IVb; 4b	CC2	SL2	CT431		Non-haemolytic	ERR1100934		1	1	11	11	2	225	5	553	CC2	I	IVb	3874 [+1 more] 87	1_0_0_0_12_0_8_0_0_0_0_0	LI	SL2	GC23248

Analysis tools

Breakdown:

Analysis:

Export:

Third party:

Dashboard settings

Layout

Links

Open links in new tab

Element controls

Enable options
Enable removal

Visual elements

Palette:
Note changing palette will reset user-selected colours.
Field: Add element

Versions

linked to any publication
not linked to any publication
Alvarez-Molina et al. 2021 Int J Food Microbiol 340:109043
Bailey et al. 2017 Genome Announc 5:
Barbuddhe et al. 2021 Environ Microbiol [Epub ahead of print]:
Blanchard et al. 2020 Heliyon 6:e04476
Bécavin et al. 2014 mBio 5:e00969-14
Camargo et al. 2019 Environ Microbiol 21:4478-4487
Carlin et al. 2021 Int J Syst Evol Microbiol 71:
Charlier et al. 2023 Cell Rep Med 4:101094
Chen et al. 2011 J Bacteriol 193:5019-20
Davenport et al. 2014 Genome Announc 2:
den Bakker et al. 2012 Appl Environ Microbiol 78:1876-89
den Bakker et al. 2013 PLoS One 8:e67511
Drali et al. 2020 New Microbes New Infect 33:100628
Dushku et al. 2020 Fish Shellfish Immunol 104:337-346
El Zowalaty et al. 2019 Microbiol Resour Announc 8:
El Zowalaty et al. 2022 Microbiol Resour Announc 11:e0112221
Fagerlund et al. 2022 Appl Environ Microbiol 88:e0086122
Giralt-Zúñiga et al. 2023 Emerg Infect Dis 29:2566-2569
Glaser et al. 2001 Science 294:849-52
Gómez-Baltazar et al. 2025 Food Res Int 208:116211
Hain et al. 2006 J Bacteriol 188:7405-15
Hain et al. 2012 BMC Genomics 13:144
Harter et al. 2019 Front Microbiol 10:1644
Kalekar et al. 2011 Ann Trop Med Parasitol 105:351-8
Kalorey et al. 2006 Comp Immunol Microbiol Infect Dis 29:295-300
Kishnani et al. 2019 Microbiol Resour Announc 8:
Klumpp et al. 2014 Genome Announc 2:
Kuch et al. 2018 Sci Rep 8:14562
Kurpas et al. 2020 Front Microbiol 11:1412
Kwong et al. 2016 J Clin Microbiol 54:333-42
Lachtara et al. 2021 Pathogens 10:
Lachtara et al. 2022 Microorganisms 10:
Leclercq et al. 2019 Int J Syst Evol Microbiol 69:74-81
Leclercq et al. 2024 N Engl J Med 390:1439-1440
Lee et al. 2023 Microbiol Resour Announc [Epub ahead of print]:e0122622
Maury et al. 2016 Nat Genet 48:308-313
McIntosh et al. 2022 Microbiol Resour Announc 11:e0072322
McMullen et al. 2012 J Bacteriol 194:3552
Minarovičová et al. 2018 Antonie Van Leeuwenhoek 111:1913-1923
Moura et al. 2016 Nat Microbiol 2:16185
Moura et al. 2017 Emerg Infect Dis 23:1462-1470
Moura et al. 2019 Infect Immun 87:
Moura et al. 2021 Sci Adv 7:eabj9805
Moura et al. 2024 Lancet Reg Health Eur 37:100800
Mäesaar et al. 2020 Microbiol Resour Announc 9:
Nelson et al. 2004 Nucleic Acids Res 32:2386-95
Nwaiwu et al. 2017 Genome Announc 5:
Núñez-Montero et al. 2018 Int J Syst Evol Microbiol 68:844-850
Nüesch-Inderbinen et al. 2021 Emerg Infect Dis 27:284-288
Orsi et al. 2008 BMC Genomics 9:539
Painset et al. 2019 Microb Genom 5:
Palacios-Gorba et al. 2021 Appl Environ Microbiol 87:
Palacios-Gorba et al. 2021 Environ Microbiol [Epub ahead of print]:
Palaiodimou et al. 2021 J Appl Microbiol [Epub ahead of print]:
Palma et al. 2020 BMC Genomics 21:130
Parsons et al. 2019 Microbiol Resour Announc 8:
Perrin et al. 2003 J Clin Microbiol 41:5308-9
Peters et al. 2021 Microbiol Resour Announc 10:
Quereda et al. 2020 Int J Syst Evol Microbiol 70:5868-5879
Raufu et al. 2022 Int J Syst Evol Microbiol 72:
Scarpa et al. 2024 Microbiol Resour Announc [Epub ahead of print]:e0122123
Schjørring et al. 2017 Euro Surveill 22:
Shakuntala et al. 2006 Vet Microbiol 117:229-34
Soni et al. 2015 Genome Announc 3:
Steele et al. 2011 J Bacteriol 193:3679-80
Sumrall et al. 2016 Genome Announc 4:
Sévellec et al. 2020 Pathogens 9:
Tasara et al. 2015 Genome Announc 3:
Tibbs-Cortes et al. 2023 Microbiol Resour Announc [Epub ahead of print]:e0075023
Toledo et al. 2018 Genes (Basel) 9:
Torresi et al. 2020 Microbiol Resour Announc 9:
Warren et al. 2015 Vet Microbiol 179:76-81
Weinmaier et al. 2013 Genome Announc 1:
Wieczorek et al. 2020 Int J Mol Sci 21:
Wulff et al. 2006 Appl Environ Microbiol 72:4313-22
Yin et al. 2019 Nat Commun 10:4283
Zakrzewski et al. 2023 Int J Mol Sci 24:
Zakrzewski et al. 2024 Sci Total Environ 908:168481