Full information on isolate 896 (id:27816)
Projects
This isolate is a member of the following project:
- Public isolates
- Isolates publicly available for consultation
Provenance/primary metadata
- id
- 27816
- isolate
- 896
- alias
- CLIP 2018/00384
- species
- L. monocytogenes
- sender
- Monika Kurpas, Medical University of Gdańsk, Gdańsk, Poland
- curator
- Auto Tagger
- update history
- 31 updates show details
- date entered
- 2018-04-20
- datestamp
- 2025-08-22
- isolation year
- 2017
- country
- Poland
- continent
- Europe
- source
- Food
- source lab
- National Veterinary Research Institute, Pulawy, Poland
- phylogenetic lineage
- I
- clonal complex
- CC2
- sublineage
- SL2
- cgmlst type
- CT4325
Publication (1)
- Kurpas M, Osek J, Moura A, Leclercq A, Lecuit M, Wieczorek K (2020). Genomic Characterization of Listeria monocytogenes Isolated From Ready-to-Eat Meat and Meat Processing Environments in Poland. Front Microbiol 11:1412
Sequence bin
- method
- Unknown
- contigs
- 71
- total length
- 3,045,243 bp
- max length
- 933,860 bp
- mean length
- 42,891 bp
- N50
- 163,111
- L50
- 4
- N90
- 90,114
- L90
- 13
- N95
- 40,111
- L95
- 16
- %GC
- 37.86
- Ns
- 0
- gaps
- 0
- loci tagged
- 3,613
Assembly checks
| Check | Status | Warn/fail reason |
|---|---|---|
| Number of contigs | ||
| Assembly size | ||
| Minimum N50 | ||
| %GC |
Similar isolates (determined by LIN codes)
- Scheme
- cgMLST1748_v2
- LIN code
- 1_0_0_0_12_0_0_132_3_0_1_0
- Lineage
- LI
- Sublineage
- SL2
- Genetic cluster
- GC871
| Prefix | Threshold | Matching isolates |
|---|---|---|
| 1_0_0_0_12_0_0_132 | 7 | 11 |
| 1_0_0_0_12_0_0_132_3 | 4 | 4 |
| 1_0_0_0_12_0_0_132_3_0 | 2 | 3 |
| 1_0_0_0_12_0_0_132_3_0_1 | 1 | 2 |
| 1_0_0_0_12_0_0_132_3_0_1_0 | 0 | 2 |
| 1 | 1660 | 1981 |
| 1_0 | 1500 | 1981 |
| 1_0_0 | 1342 | 1981 |
| 1_0_0_0 | 1182 | 1981 |
| 1_0_0_0_12 | 1020 | 365 |
| 1_0_0_0_12_0 | 200 | 361 |
| 1_0_0_0_12_0_0 | 50 | 332 |
| 1_0_0_0_12_0_0_132 | 7 | 11 |
| 1_0_0_0_12_0_0_132_3 | 4 | 4 |
| 1_0_0_0_12_0_0_132_3_0 | 2 | 3 |
| 1_0_0_0_12_0_0_132_3_0_1 | 1 | 2 |
| 1_0_0_0_12_0_0_132_3_0_1_0 | 0 | 2 |
Similar isolates (determined by classification schemes)
Experimental schemes are subject to change and are not a stable part of the nomenclature.
| Classification scheme | Underlying scheme | Clustering method | Mismatch threshold | Status | Group |
|---|---|---|---|---|---|
| auto_cgclust_4 | cgMLST1748 | Single-linkage | 4 | experimental | 7098 (11 isolates) |
| auto_cgclust_7 | cgMLST1748 | Single-linkage | 7 | experimental | 5829 (13 isolates) |
| auto_cgclust_10 | cgMLST1748 | Single-linkage | 10 | experimental | 4855 (14 isolates) |
| auto_cgclust_30 | cgMLST1748 | Single-linkage | 30 | experimental | 62 (217 isolates) |
| auto_cgclust_150 | cgMLST1748 | Single-linkage | 150 | experimental | 321 (219 isolates) |
| auto_cgclust_500 | cgMLST1748 | Single-linkage | 500 | experimental | 14 (219 isolates) |
| auto_cgclust_1000 | cgMLST1748 | Single-linkage | 1000 | experimental | 1 (1041 isolates) |
| auto_cgclust_1500 | cgMLST1748 | Single-linkage | 1500 | experimental | 1 (1135 isolates) |
| auto_cgclust_4 | cgMLST1748 | Single-linkage | 4 | experimental | 7098 (11 isolates) |
| auto_cgclust_7 | cgMLST1748 | Single-linkage | 7 | experimental | 5829 (13 isolates) |
| auto_cgclust_10 | cgMLST1748 | Single-linkage | 10 | experimental | 4855 (14 isolates) |
| auto_cgclust_30 | cgMLST1748 | Single-linkage | 30 | experimental | 62 (217 isolates) |
| auto_cgclust_150 | cgMLST1748 | Single-linkage | 150 | experimental | 321 (219 isolates) |
| auto_cgclust_500 | cgMLST1748 | Single-linkage | 500 | experimental | 14 (219 isolates) |
| auto_cgclust_1000 | cgMLST1748 | Single-linkage | 1000 | experimental | 1 (1041 isolates) |
| auto_cgclust_1500 | cgMLST1748 | Single-linkage | 1500 | experimental | 1 (1135 isolates) |
Schemes and loci
Navigate and select schemes within tree to display allele designations
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