Profile information for cgST-3 (cgMLST)

cgST
3
LIC_RS00025
77
LIC_RS00030
77
LIC_RS00035
73
LIC_RS00095
73
LIC_RS00150
4
LIC_RS00160
47
LIC_RS00205
71
LIC_RS00245
1
LIC_RS00260
63
LIC_RS00335
1
LIC_RS00340
62
LIC_RS00355
1
LIC_RS00380
70
LIC_RS00385
1
LIC_RS00525
74
LIC_RS00575
65
LIC_RS00580 (hisH)
N
LIC_RS00585
1
LIC_RS00625
60
LIC_RS00655
74
LIC_RS00725
73
LIC_RS00810
60
LIC_RS00815
77
LIC_RS01005
71
LIC_RS01070
1
LIC_RS01090
73
LIC_RS01095
73
LIC_RS01150
76
LIC_RS01160
64
LIC_RS01205
69
LIC_RS01210
1
LIC_RS01375
61
LIC_RS01380
62
LIC_RS01395 (fusA)
77
LIC_RS01435
69
LIC_RS01495
1
LIC_RS01500
71
LIC_RS01545 (fliE)
36
LIC_RS01550 (flgC)
59
LIC_RS01555 (flgB)
1
LIC_RS01605
78
LIC_RS01610
53
LIC_RS01635
1
LIC_RS01645
50
LIC_RS01660
1
LIC_RS01680
65
LIC_RS01690
1
LIC_RS01745
76
LIC_RS01760
77
LIC_RS01850
72
LIC_RS01855
78
LIC_RS01860
4
LIC_RS01865
74
LIC_RS01870
7
LIC_RS02025
4
LIC_RS02030
76
LIC_RS02035
25
LIC_RS02110
6
LIC_RS02115
1
LIC_RS02120
81
LIC_RS02240
75
LIC_RS02250
5
LIC_RS02255
81
LIC_RS02310
68
LIC_RS02315
69
LIC_RS02325
78
LIC_RS02350
64
LIC_RS02365
1
LIC_RS02455
71
LIC_RS02460
76
LIC_RS02515
78
LIC_RS02520
57
LIC_RS02715
60
LIC_RS02720
1
LIC_RS02725
1
LIC_RS02730 (dnaK)
78
LIC_RS02740
6
LIC_RS02770
74
LIC_RS02780
74
LIC_RS03010
N
LIC_RS03035
72
LIC_RS03110
4
LIC_RS03210
4
LIC_RS03215
75
LIC_RS03220
1
LIC_RS03225
61
LIC_RS03230
75
LIC_RS03235
1
LIC_RS03270
42
LIC_RS03275
72
LIC_RS03500
5
LIC_RS03505
1
LIC_RS03510
1
LIC_RS03515
60
LIC_RS03700
75
LIC_RS03705
74
LIC_RS03820
60
LIC_RS03870
54
LIC_RS03900
80
LIC_RS03955
73
LIC_RS03960
1
LIC_RS03980
70
LIC_RS03990
1
LIC_RS04060
1
LIC_RS04065
60
LIC_RS04070
70
LIC_RS04145
67
LIC_RS04340
73
LIC_RS04345
7
LIC_RS04350
72
LIC_RS04360 (acpS)
N
LIC_RS04365
49
LIC_RS04370
6
LIC_RS04375
1
LIC_RS04385 (tsf)
47
LIC_RS04395 (frr)
63
LIC_RS04400
64
LIC_RS04405
72
LIC_RS04410
71
LIC_RS04415
75
LIC_RS04420
78
LIC_RS04425
73
LIC_RS04430
67
LIC_RS04440
73
LIC_RS04445
75
LIC_RS04450
56
LIC_RS04520
73
LIC_RS04525
77
LIC_RS04530
1
LIC_RS04540
73
LIC_RS04600
1
LIC_RS04605
1
LIC_RS04720
63
x_1
69
LIC_RS05180
1
LIC_RS05185
69
LIC_RS05190
1
LIC_RS05225
75
LIC_RS05230
71
LIC_RS05300
1
LIC_RS05355
73
LIC_RS05360
76
LIC_RS05500
63
LIC_RS05505
1
LIC_RS05530
65
LIC_RS05535
1
LIC_RS05555
76
LIC_RS05725
1
LIC_RS05750
63
LIC_RS05845
66
LIC_RS05850
63
LIC_RS05855
67
LIC_RS05875
74
LIC_RS05880
65
LIC_RS05885
75
LIC_RS06005
45
LIC_RS06015
4
LIC_RS06110
72
LIC_RS06115
73
LIC_RS06140
65
LIC_RS06340
64
LIC_RS06370
1
LIC_RS06375
1
LIC_RS06385
77
LIC_RS06390
69
LIC_RS06395
77
LIC_RS06470
72
LIC_RS06475
72
LIC_RS06480
76
LIC_RS06485
43
LIC_RS06490
76
LIC_RS06510
42
LIC_RS06535
68
LIC_RS06550
N
LIC_RS06555
73
LIC_RS06700
64
LIC_RS06705
76
LIC_RS06740
1
LIC_RS06745
7
LIC_RS06815
1
LIC_RS06825
73
LIC_RS06850 (groEL)
68
LIC_RS06855
1
LIC_RS06950
71
LIC_RS07020
57
LIC_RS07025
69
LIC_RS07035
69
LIC_RS07040
1
LIC_RS07045
6
LIC_RS07055
75
LIC_RS07060
1
LIC_RS07075
1
LIC_RS07080
76
LIC_RS07095
1
LIC_RS07115
1
LIC_RS07125 (fliI)
76
LIC_RS07180
63
LIC_RS07190
6
LIC_RS07195
71
LIC_RS07200
1
LIC_RS07210
47
LIC_RS07215
76
LIC_RS07220
61
LIC_RS07240
74
LIC_RS07260
6
LIC_RS07265
70
LIC_RS07445
71
LIC_RS07450
71
LIC_RS07455
70
LIC_RS07470
68
LIC_RS07475
5
LIC_RS07480
4
LIC_RS07485 (gatA)
6
LIC_RS07490
1
LIC_RS07580
59
LIC_RS07640
1
LIC_RS07680
41
LIC_RS07685
4
LIC_RS07745
1
LIC_RS07760
1
LIC_RS07775
75
LIC_RS07780
71
LIC_RS07795
5
LIC_RS07805
1
LIC_RS07825
1
LIC_RS07855
6
LIC_RS07865
1
LIC_RS07890
1
LIC_RS07895 (pyrG)
71
LIC_RS07900
66
LIC_RS07915
1
LIC_RS07920
1
LIC_RS07925
66
LIC_RS07930
1
LIC_RS07935
74
LIC_RS07940
73
LIC_RS07965
1
LIC_RS07985 (trmD)
56
LIC_RS08040
1
LIC_RS08045
73
LIC_RS08050
70
LIC_RS08055
73
LIC_RS08060
55
LIC_RS08090
64
LIC_RS08145
72
LIC_RS08150
70
LIC_RS08175
80
LIC_RS08180
5
LIC_RS08190
1
LIC_RS08210
1
LIC_RS08220
66
LIC_RS08225
47
LIC_RS08230
1
LIC_RS08265
78
LIC_RS08270
67
LIC_RS08280 (fabG)
4
LIC_RS08300
1
LIC_RS08305
35
LIC_RS08345
75
LIC_RS08405
67
LIC_RS08445
44
LIC_RS08460 (purH)
73
LIC_RS08465
64
LIC_RS08470
1
LIC_RS08500
57
LIC_RS08660
68
LIC_RS08675
75
LIC_RS08685
1
LIC_RS08735
70
LIC_RS08760
72
LIC_RS08930
68
LIC_RS08935
6
LIC_RS08940
69
LIC_RS09020
78
LIC_RS09025
73
LIC_RS09030
59
LIC_RS09065
5
LIC_RS09070
64
LIC_RS09090
71
LIC_RS09105
1
LIC_RS09130
69
LIC_RS09135
73
LIC_RS09145
75
LIC_RS09150
68
LIC_RS09175
N
LIC_RS09200
71
LIC_RS09205
73
LIC_RS09215
1
LIC_RS09230
74
LIC_RS09225
1
LIC_RS09245
75
LIC_RS09250
46
LIC_RS09280
65
LIC_RS09290
68
LIC_RS09305
1
LIC_RS09350
31
LIC_RS09365
1
LIC_RS09380
69
LIC_RS09385
77
LIC_RS09400
1
LIC_RS09405
75
LIC_RS09415
1
LIC_RS09420
1
LIC_RS09450
57
LIC_RS09460
66
LIC_RS09465
64
LIC_RS09470
68
LIC_RS09475
1
LIC_RS09535
66
LIC_RS09545
63
LIC_RS09590
1
LIC_RS09600
1
LIC_RS09605
71
LIC_RS09675
76
LIC_RS09685
72
LIC_RS09785
72
LIC_RS09790
75
LIC_RS09905
74
LIC_RS09920
71
LIC_RS09925
64
LIC_RS09940
1
LIC_RS09945
71
LIC_RS09955
7
LIC_RS10065
1
LIC_RS10090
1
LIC_RS10095
76
LIC_RS10100
1
LIC_RS10215
63
LIC_RS10220 (sdhA)
76
LIC_RS10265
74
LIC_RS10315
72
LIC_RS10345
71
LIC_RS10350
1
LIC_RS10355
66
LIC_RS10360
7
LIC_RS10365
23
LIC_RS10590
1
LIC_RS10595
60
LIC_RS10670
69
LIC_RS10675 (pgk)
76
LIC_RS10705
63
LIC_RS10710
65
LIC_RS10755
74
LIC_RS10765
73
LIC_RS10770
75
LIC_RS10785
1
LIC_RS11310
74
LIC_RS11320
76
LIC_RS11445
54
LIC_RS11460
69
LIC_RS11470
1
LIC_RS11495
76
LIC_RS11500
72
LIC_RS11590
77
LIC_RS11595
73
LIC_RS11625
1
x_2
68
LIC_RS11760
47
LIC_RS11765
1
LIC_RS11770
69
LIC_RS11780
1
LIC_RS11785
70
LIC_RS11805
75
LIC_RS11815
68
LIC_RS11825
39
LIC_RS12210
4
LIC_RS12250
69
LIC_RS12300
58
LIC_RS12325
70
LIC_RS12330
74
LIC_RS12375
68
LIC_RS12485
69
LIC_RS12500
68
LIC_RS12530
69
LIC_RS12540
56
LIC_RS12545
1
LIC_RS12550
66
LIC_RS12555
N
LIC_RS12560
52
LIC_RS12660
76
LIC_RS12665
77
LIC_RS12675
71
LIC_RS12680
72
LIC_RS12770
70
LIC_RS12935
67
LIC_RS12945
70
LIC_RS12980
4
LIC_RS12990
71
LIC_RS12995
73
LIC_RS13010
1
LIC_RS13015
69
LIC_RS13020
76
LIC_RS13025
74
LIC_RS13135
N
LIC_RS13145
69
LIC_RS13170
70
LIC_RS13185
1
LIC_RS13190
74
LIC_RS13195
N
LIC_RS13210
3
LIC_RS13265
66
LIC_RS13405
1
LIC_RS13420
1
LIC_RS13425
72
LIC_RS13470
66
LIC_RS13500
76
LIC_RS13510
72
LIC_RS13515
4
LIC_RS13755
73
LIC_RS13760
4
LIC_RS13855
76
LIC_RS13880
64
LIC_RS13970
64
LIC_RS13975
30
LIC_RS13980
1
LIC_RS14070
1
LIC_RS14075
N
LIC_RS14080
N
LIC_RS14085
69
LIC_RS14090
76
LIC_RS14095
71
LIC_RS14110
75
LIC_RS14115
74
LIC_RS14120
70
LIC_RS14230
72
LIC_RS14300
60
LIC_RS14305
38
LIC_RS14425
70
LIC_RS14430
72
LIC_RS14485
5
LIC_RS14490
67
LIC_RS14520 (gltA)
76
LIC_RS14530
50
LIC_RS14570
67
LIC_RS14615
73
LIC_RS14735 (rplB)
7
LIC_RS14760 (tuf)
78
LIC_RS15120
77
LIC_RS15130
1
LIC_RS15195
72
LIC_RS15200
61
LIC_RS15215
1
LIC_RS15220
72
LIC_RS15250
65
LIC_RS15275
72
LIC_RS15280
69
LIC_RS15510
7
LIC_RS15535
1
LIC_RS15540
72
LIC_RS15925
66
LIC_RS15980
74
LIC_RS16170
60
LIC_RS16175
73
LIC_RS16195
1
LIC_RS16225
7
LIC_RS16230
63
LIC_RS16285
70
LIC_RS16320
72
LIC_RS16350
1
LIC_RS16505
65
LIC_RS16515
73
LIC_RS16565
70
LIC_RS16570
76
LIC_RS16780
70
LIC_RS16785
70
LIC_RS16800
51
LIC_RS16825
60
LIC_RS16830
75
LIC_RS16895
70
LIC_RS16975
75
LIC_RS16980
75
LIC_RS17045
65
LIC_RS17065
1
LIC_RS17070
1
LIC_RS17110 (coaD)
1
LIC_RS17115
57
LIC_RS17180
72
LIC_RS17185
1
LIC_RS17210
65
LIC_RS17225
74
LIC_RS17230
69
LIC_RS17340
77
LIC_RS17345
75
LIC_RS17350
1
LIC_RS17405
45
LIC_RS17410
75
LIC_RS17415
75
LIC_RS17420
67
LIC_RS17445
1
LIC_RS17510
74
LIC_RS17735
30
LIC_RS17740
4
LIC_RS17745
71
LIC_RS17750
79
LIC_RS17790
64
LIC_RS17860
71
LIC_RS17865
1
LIC_RS17870
1
LIC_RS17875
83
LIC_RS17880
67
LIC_RS17890
73
LIC_RS17895
75
LIC_RS17900
45
LIC_RS17905
1
LIC_RS17930
1
LIC_RS17935
67
LIC_RS17965
76
LIC_RS17970
62
LIC_RS18020
70
LIC_RS18025
73
LIC_RS18040
75
LIC_RS18045
6
LIC_RS18075
68
LIC_RS18080
63
LIC_RS18115
69
LIC_RS18170
N
LIC_RS18185
71
LIC_RS18205
67
LIC_RS18310
63
LIC_RS18315
1
LIC_RS18330
74
LIC_RS18335
67
LIC_RS18410
75
LIC_RS18435
64
LIC_RS18440
66
LIC_RS18445
65
LIC_RS18490
1
LIC_RS18495
69
LIC_RS18505
71
LIC_RS18565
1
LIC_RS18695
48
LIC_RS18700
48
LIC_RS18705
76
LIC_RS18710
73
LIC_RS18835
72
LIC_RS19060
74
LIC_RS19065
65
LIC_RS19220
1
LIC_RS19290
72
LIC_RS19305
6
LIC_RS19340
1
LIC_RS19375
N
LIC_RS19385
N
LIC_RS19420
N
LIC_RS19435
67
sender
Auto Definer
curator
Auto Definer
date entered
2017-05-28
datestamp
2017-05-28

Similar profiles (determined by classification schemes)

Experimental schemes are subject to change and are not a stable part of the nomenclature.

Classification schemeClustering methodMismatch thresholdStatusGroup Profiles
Cluster_40_cgMLSTSingle-linkage40experimental310
Test-110Single-linkage110experimental32
Test-150Single-linkage150experimental32
Test-20Single-linkage20experimental32
Test-200Single-linkage200experimental32
Test-220Single-linkage220experimental32
Test-250Single-linkage250experimental32
Test-30Single-linkage30experimental310
Test-300Single-linkage300experimental32
Test-50Single-linkage50experimental310
Test-60Single-linkage60experimental310
Test-75Single-linkage75experimental32
Test-80Single-linkage80experimental310

Tools

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