Full information on isolate B21 (id:969)

Provenance/primary metadata

id
969
isolate
B21
biosample
SAMN09216390
clade
P1
species
yasudae
serogroup
not examined
serovar
not examined
world region
South America
country
Brazil
host
environment
sample type
soil
source lab
Yale Centre for Genomic Analysis
comments
published as yasuade in Casanovas-Massana et al., 2019
sender
Linda Grillová, Institut Pasteur, Paris
curator
Jean-François Mariet, Institut Pasteur, Paris (E-mail: jean-francois.mariet@pasteur.fr)
update history
20 updates show details
date entered
2019-06-17
datestamp
2024-05-24

Publication (1)

  • Casanovas-Massana A, Hamond C, Santos LA, de Oliveira D, Hacker KP, Balassiano I, Costa F, Medeiros MA, Reis MG, Ko AI, Wunder EA (2020). Leptospira yasudae sp. nov. and Leptospira stimsonii sp. nov., two new species of the pathogenic group isolated from environmental sources. Int J Syst Evol Microbiol 70:1450-1456

Sequence bin

contigs
28
total length
4,458,090 bp
max length
658,525 bp
mean length
159,218 bp
N50
472,231
L50
4
N90
115,661
L90
10
N95
79,451
L95
13
%GC
45.51
Ns
0
gaps
0
loci tagged
599

Show sequence bin

Assembly checks

CheckStatusWarn/fail reason
Number of contigs
Assembly size
Minimum N50
%GC

Annotation quality metrics

Scheme completion

SchemeScheme lociDesignated lociAnnotation
ScoreStatus
cgMLST54552095

Analysis

rMLST species identification

RankTaxonTaxonomySupportMatches
SPECIES Leptospira yasudae Spirochaetes > Spirochaetia > Leptospirales > Leptospiraceae > Leptospira > Leptospira yasudae 100%

Analysis performed: 2022-12-05

Similar isolates (determined by classification schemes)

No similar isolates at any threshold. Show groups

Schemes and loci

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Tools

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