Full information on isolate F1 (id:968)
Provenance/primary metadata
- id
- 968
- isolate
- F1
- biosample
- SAMN09216371
- clade
- P1
- species
- yasudae
- serogroup
- not examined
- serovar
- not examined
- world region
- South America
- country
- Brazil
- host
- environment
- sample type
- soil
- source lab
- Yale Centre for Genomic Analysis
- comments
- published as yasudae in Casanovas-Massana et al., 2019
- sender
- Linda Grillová, Institut Pasteur, Paris
- curator
- Jean-François Mariet, Institut Pasteur, Paris (E-mail: jean-francois.mariet@pasteur.fr)
- update history
- 19 updates show details
- date entered
- 2019-06-17
- datestamp
- 2024-05-24
Publication (1)
- Casanovas-Massana A, Hamond C, Santos LA, de Oliveira D, Hacker KP, Balassiano I, Costa F, Medeiros MA, Reis MG, Ko AI, Wunder EA (2020). Leptospira yasudae sp. nov. and Leptospira stimsonii sp. nov., two new species of the pathogenic group isolated from environmental sources. Int J Syst Evol Microbiol 70:1450-1456
Sequence bin
- contigs
- 25
- total length
- 4,444,566 bp
- max length
- 1,070,278 bp
- mean length
- 177,783 bp
- N50
- 589,757
- L50
- 3
- N90
- 212,819
- L90
- 7
- N95
- 95,979
- L95
- 9
- %GC
- 45.49
- Ns
- 0
- gaps
- 0
- loci tagged
- 598
Assembly checks
| Check | Status | Warn/fail reason |
|---|---|---|
| Number of contigs | ||
| Assembly size | ||
| Minimum N50 | ||
| %GC |
Annotation quality metrics
Scheme completion
| Scheme | Scheme loci | Designated loci | Annotation | |
|---|---|---|---|---|
| Score | Status | |||
| cgMLST | 545 | 521 | 95 | |
Similar isolates (determined by classification schemes)
No similar isolates at any threshold. Show groups
Schemes and loci
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Tools
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