Full information on isolate BUT 6 (id:1864)
Provenance/primary metadata
- id
- 1864
- isolate
- BUT 6
- biosample
- SAMN02436574
- accession number
- GCF_000306235.2
- clade
- P2
- species
- fainei
- serogroup
- Hurstbridge
- serovar
- Hurstbridge
- sequencing year
- 2012
- world region
- Australia and New Zealand
- country
- Australia
- host
- Pig
- sample type
- Unknown
- source lab
- Craig Venter Institute
- sender
- Julien Guglielmini, Institut Pasteur
- curator
- Auto Tagger
- update history
- 4 updates show details
- date entered
- 2024-05-24
- datestamp
- 2024-05-24
Versions
More than one version of this isolate record exist.
- Older versions
- 226
Publications (2)
- Guglielmini J, Bourhy P, Schiettekatte O, Zinini F, Brisse S, Picardeau M (2019). Genus-wide Leptospira core genome multilocus sequence typing for strain taxonomy and global surveillance. PLoS Negl Trop Dis 13:e0007374
- Guglielmini J, Bourhy P, Schiettekatte O, Zinini F, Brisse S, Picardeau M (2020). Correction: Genus-wide Leptospira core genome multilocus sequence typing for strain taxonomy and global surveillance. PLoS Negl Trop Dis 14:e0008673
Sequence bin
- method
- other
- contigs
- 13
- total length
- 4,287,324 bp
- max length
- 1,844,499 bp
- mean length
- 329,795 bp
- N50
- 579,278
- L50
- 2
- N90
- 175,453
- L90
- 7
- N95
- 154,273
- L95
- 8
- %GC
- 43.53
- Ns
- 0
- gaps
- 0
- loci tagged
- 601
Assembly checks
| Check | Status | Warn/fail reason |
|---|---|---|
| Number of contigs | ||
| Assembly size | ||
| Minimum N50 | ||
| %GC |
Annotation quality metrics
Scheme completion
| Scheme | Scheme loci | Designated loci | Annotation | |
|---|---|---|---|---|
| Score | Status | |||
| cgMLST | 545 | 529 | 97 | |
Similar isolates (determined by classification schemes)
No similar isolates at any threshold. Show groups
Schemes and loci
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Tools
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