Full information on isolate BUT 6 (id:1864)

Provenance/primary metadata

id
1864
isolate
BUT 6
biosample
SAMN02436574
accession number
GCF_000306235.2
clade
P2
species
fainei
serogroup
Hurstbridge
serovar
Hurstbridge
sequencing year
2012
world region
Australia and New Zealand
country
Australia
host
Pig
sample type
Unknown
source lab
Craig Venter Institute
sender
Julien Guglielmini, Institut Pasteur
curator
Auto Tagger
update history
4 updates show details
date entered
2024-05-24
datestamp
2024-05-24

Versions

More than one version of this isolate record exist.

Older versions
226

Publications (2)

  • Guglielmini J, Bourhy P, Schiettekatte O, Zinini F, Brisse S, Picardeau M (2019). Genus-wide Leptospira core genome multilocus sequence typing for strain taxonomy and global surveillance. PLoS Negl Trop Dis 13:e0007374
  • Guglielmini J, Bourhy P, Schiettekatte O, Zinini F, Brisse S, Picardeau M (2020). Correction: Genus-wide Leptospira core genome multilocus sequence typing for strain taxonomy and global surveillance. PLoS Negl Trop Dis 14:e0008673

Sequence bin

contigs
13
total length
4,287,324 bp
max length
1,844,499 bp
mean length
329,795 bp
N50
579,278
L50
2
N90
175,453
L90
7
N95
154,273
L95
8
loci tagged
601

Show sequence bin

Annotation quality metrics

Scheme completion

SchemeScheme lociDesignated lociAnnotation
ScoreStatus
cgMLST54552997

Analysis

rMLST species identification

RankTaxonTaxonomySupportMatches
SPECIES Leptospira fainei Spirochaetota > Spirochaetia > Leptospirales > Leptospiraceae > Leptospira > Leptospira fainei 100%

Analysis performed: 2024-05-24

Similar isolates (determined by classification schemes)

No similar isolates at any threshold. Show groups

Schemes and loci

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