Full information on isolate 202302334 (id:1562)

Provenance/primary metadata

id
1562
isolate
202302334
alias
LGVF02
biosample
SAMN21855215
clade
P1
species
sanjuanensis
serogroup
Unknown
serovar
Unknown
sequencing year
2023
world region
Central America
country
USA
host
Unknown
sample type
Unknown
source lab
USDA
sender
Jean-Fran├žois Mariet
curator
Jean-Fran├žois Mariet, Institut Pasteur, Paris (E-mail: jean-francois.mariet@pasteur.fr)
update history
11 updates show details
date entered
2023-10-20
datestamp
2024-05-24

Sequence bin

contigs
68
total length
4,453,723 bp
max length
966,200 bp
mean length
65,496 bp
N50
521,765
L50
3
N90
69,244
L90
12
N95
50,186
L95
16
%GC
45.09
Ns
0
gaps
0
loci tagged
573

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Annotation quality metrics

Scheme completion

SchemeScheme lociDesignated lociAnnotation
ScoreStatus
cgMLST54551895

Analysis

rMLST species identification

RankTaxonTaxonomySupportMatches
SPECIES Leptospira sanjuanensis Spirochaetota > Spirochaetia > Leptospirales > Leptospiraceae > Leptospira > Leptospira sanjuanensis 100%

Analysis performed: 2023-10-25

Similar isolates (determined by classification schemes)

No similar isolates at any threshold. Show groups

Schemes and loci

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Tools

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