Full information on isolate 202302334 (id:1562)
Provenance/primary metadata
- id
- 1562
- isolate
- 202302334
- alias
- LGVF02
- biosample
- SAMN21855215
- clade
- P1
- species
- sanjuanensis
- serogroup
- Unknown
- serovar
- Unknown
- sequencing year
- 2023
- world region
- Central America
- country
- USA
- host
- Unknown
- sample type
- Unknown
- source lab
- USDA
- sender
- Jean-François Mariet
- curator
- Jean-François Mariet, Institut Pasteur, Paris (E-mail: jean-francois.mariet@pasteur.fr)
- update history
- 11 updates show details
- date entered
- 2023-10-20
- datestamp
- 2024-05-24
Sequence bin
- contigs
- 68
- total length
- 4,453,723 bp
- max length
- 966,200 bp
- mean length
- 65,496 bp
- N50
- 521,765
- L50
- 3
- N90
- 69,244
- L90
- 12
- N95
- 50,186
- L95
- 16
- %GC
- 45.09
- Ns
- 0
- gaps
- 0
- loci tagged
- 573
Assembly checks
| Check | Status | Warn/fail reason |
|---|---|---|
| Number of contigs | ||
| Assembly size | ||
| Minimum N50 | ||
| %GC |
Annotation quality metrics
Scheme completion
| Scheme | Scheme loci | Designated loci | Annotation | |
|---|---|---|---|---|
| Score | Status | |||
| cgMLST | 545 | 518 | 95 | |
Similar isolates (determined by classification schemes)
No similar isolates at any threshold. Show groups
Schemes and loci
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Tools
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