Full information on isolate 1530d (id:1510)
Provenance/primary metadata
- id
- 1510
- isolate
- 1530d
- alias
- 1530d
- biosample
- SAMN12721657
- clade
- P1
- species
- interrogans
- serogroup
- Unknown
- serovar
- Yeoncheon
- isolation year
- 2014
- sequencing year
- 2019
- world region
- Melanesia
- country
- Malaysia
- city
- Klang
- host
- human
- sample type
- Culture
- source lab
- Genbank
- sender
- Vallier SORDOILLET, CNR Leptospirose PASTEUR
- curator
- Jean-François Mariet, Institut Pasteur, Paris (E-mail: jean-francois.mariet@pasteur.fr)
- update history
- 8 updates show details
- date entered
- 2023-01-27
- datestamp
- 2024-04-25
Sequence bin
- contigs
- 9
- total length
- 5,013,967 bp
- max length
- 4,318,326 bp
- mean length
- 557,108 bp
- N50
- 4,318,326
- L50
- 1
- N90
- 349,777
- L90
- 2
- N95
- 82,644
- L95
- 4
- %GC
- 35.00
- Ns
- 0
- gaps
- 0
- loci tagged
- 547
Assembly checks
| Check | Status | Warn/fail reason |
|---|---|---|
| Number of contigs | ||
| Assembly size | ||
| Minimum N50 | ||
| %GC |
Annotation quality metrics
Scheme completion
| Scheme | Scheme loci | Designated loci | Annotation | |
|---|---|---|---|---|
| Score | Status | |||
| cgMLST | 545 | 533 | 97 | |
Similar isolates (determined by classification schemes)
No similar isolates at any threshold. Show groups
Schemes and loci
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Tools
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