Full information on isolate DCP-017 (id:1475)

Provenance/primary metadata

id
1475
isolate
DCP-017
alias
DCP-017
biosample
SAMN24659830
clade
P1
species
santarosai
serogroup
Unknown
serovar
Unknown
isolation year
2021
sequencing year
2022
world region
Central America
country
USA
city
Puerto Rico
host
bovine
sample type
Urine
source lab
GenBank
sender
Vallier SORDOILLET, CNR Leptospirose PASTEUR
curator
Jean-Fran├žois Mariet, Institut Pasteur, Paris (E-mail: jean-francois.mariet@pasteur.fr)
update history
8 updates show details
date entered
2023-01-27
datestamp
2024-04-25

Sequence bin

contigs
2
total length
4,105,855 bp
max length
3,744,822 bp
mean length
2,052,928 bp
N50
3,744,822
L50
1
N90
3,744,822
L90
1
N95
361,033
L95
2
%GC
41.75
Ns
0
gaps
0
loci tagged
547

Show sequence bin

Assembly checks

CheckStatusWarn/fail reason
Number of contigs
Assembly size
Minimum N50
%GC

Annotation quality metrics

Scheme completion

SchemeScheme lociDesignated lociAnnotation
ScoreStatus
cgMLST54553197

Analysis

rMLST species identification

RankTaxonTaxonomySupportMatches
SPECIES Leptospira santarosai Spirochaetes > Spirochaetia > Leptospirales > Leptospiraceae > Leptospira > Leptospira santarosai 100%

Analysis performed: 2023-02-15

Similar isolates (determined by classification schemes)

No similar isolates at any threshold. Show groups

Schemes and loci

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Tools

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