Full information on isolate DCP-017 (id:1475)
Provenance/primary metadata
- id
- 1475
- isolate
- DCP-017
- alias
- DCP-017
- biosample
- SAMN24659830
- clade
- P1
- species
- santarosai
- serogroup
- Unknown
- serovar
- Unknown
- isolation year
- 2021
- sequencing year
- 2022
- world region
- Central America
- country
- USA
- city
- Puerto Rico
- host
- bovine
- sample type
- Urine
- source lab
- GenBank
- sender
- Vallier SORDOILLET, CNR Leptospirose PASTEUR
- curator
- Jean-François Mariet, Institut Pasteur, Paris (E-mail: jean-francois.mariet@pasteur.fr)
- update history
- 8 updates show details
- date entered
- 2023-01-27
- datestamp
- 2024-04-25
Sequence bin
- contigs
- 2
- total length
- 4,105,855 bp
- max length
- 3,744,822 bp
- mean length
- 2,052,928 bp
- N50
- 3,744,822
- L50
- 1
- N90
- 3,744,822
- L90
- 1
- N95
- 361,033
- L95
- 2
- %GC
- 41.75
- Ns
- 0
- gaps
- 0
- loci tagged
- 547
Assembly checks
| Check | Status | Warn/fail reason |
|---|---|---|
| Number of contigs | ||
| Assembly size | ||
| Minimum N50 | ||
| %GC |
Annotation quality metrics
Scheme completion
| Scheme | Scheme loci | Designated loci | Annotation | |
|---|---|---|---|---|
| Score | Status | |||
| cgMLST | 545 | 531 | 97 | |
Similar isolates (determined by classification schemes)
No similar isolates at any threshold. Show groups
Schemes and loci
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Tools
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