Full information on isolate M528-19 (id:1331)
Provenance/primary metadata
- id
- 1331
- isolate
- M528-19
- alias
- M528-19
- biosample
- SAMN06212384
- accession number
- GCF_001981505.1
- clade
- P1
- species
- santarosai
- serogroup
- Unknown
- serovar
- Unknown
- isolation year
- 2008
- sequencing year
- 2017
- world region
- South America
- country
- Brazil
- city
- Sao Paulo state
- host
- capybara
- sample type
- kidney
- source lab
- GenBank
- sender
- Vallier SORDOILLET, CNR Leptospirose PASTEUR
- curator
- Jean-François Mariet, Institut Pasteur, Paris (E-mail: jean-francois.mariet@pasteur.fr)
- update history
- 9 updates show details
- date entered
- 2022-10-12
- datestamp
- 2024-04-25
Sequence bin
- contigs
- 45
- total length
- 4,205,800 bp
- max length
- 475,610 bp
- mean length
- 93,463 bp
- N50
- 162,947
- L50
- 8
- N90
- 54,188
- L90
- 24
- N95
- 32,066
- L95
- 29
- %GC
- 41.72
- Ns
- 0
- gaps
- 0
- loci tagged
- 600
Assembly checks
| Check | Status | Warn/fail reason |
|---|---|---|
| Number of contigs | ||
| Assembly size | ||
| Minimum N50 | ||
| %GC |
Annotation quality metrics
Scheme completion
| Scheme | Scheme loci | Designated loci | Annotation | |
|---|---|---|---|---|
| Score | Status | |||
| cgMLST | 545 | 528 | 96 | |
Similar isolates (determined by classification schemes)
No similar isolates at any threshold. Show groups
Schemes and loci
Navigate and select schemes within tree to display allele designations
Tools
Export:
Analysis: