Full information on isolate M498 (id:1327)

Provenance/primary metadata

id
1327
isolate
M498
alias
M498
biosample
SAMN06212380
accession number
GCF_001952685.1
clade
P1
species
santarosai
serogroup
Sejroe
serovar
Guaricura
isolation year
1998
sequencing year
2017
world region
South America
country
Brazil
city
Sao Paulo state
host
bovine
sample type
Urine
source lab
GenBank
sender
Vallier SORDOILLET, CNR Leptospirose PASTEUR
curator
Jean-Fran├žois Mariet, Institut Pasteur, Paris (E-mail: jean-francois.mariet@pasteur.fr)
update history
11 updates show details
date entered
2022-10-12
datestamp
2024-04-25

Sequence bin

contigs
57
total length
4,015,390 bp
max length
331,771 bp
mean length
70,446 bp
N50
122,203
L50
11
N90
44,000
L90
30
N95
28,232
L95
36
%GC
41.90
Ns
8
gaps
8
loci tagged
600

Show sequence bin

Assembly checks

CheckStatusWarn/fail reason
Number of contigs
Assembly size
Minimum N50
%GC

Annotation quality metrics

Scheme completion

SchemeScheme lociDesignated lociAnnotation
ScoreStatus
cgMLST54552395

Analysis

rMLST species identification

RankTaxonTaxonomySupportMatches
SPECIES Leptospira santarosai Spirochaetes > Spirochaetia > Leptospirales > Leptospiraceae > Leptospira > Leptospira santarosai 100%

Analysis performed: 2022-12-05

Similar isolates (determined by classification schemes)

No similar isolates at any threshold. Show groups

Schemes and loci

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Tools

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