Full information on isolate M498 (id:1327)
Provenance/primary metadata
- id
- 1327
- isolate
- M498
- alias
- M498
- biosample
- SAMN06212380
- accession number
- GCF_001952685.1
- clade
- P1
- species
- santarosai
- serogroup
- Sejroe
- serovar
- Guaricura
- isolation year
- 1998
- sequencing year
- 2017
- world region
- South America
- country
- Brazil
- city
- Sao Paulo state
- host
- bovine
- sample type
- Urine
- source lab
- GenBank
- sender
- Vallier SORDOILLET, CNR Leptospirose PASTEUR
- curator
- Jean-François Mariet, Institut Pasteur, Paris (E-mail: jean-francois.mariet@pasteur.fr)
- update history
- 11 updates show details
- date entered
- 2022-10-12
- datestamp
- 2024-04-25
Sequence bin
- contigs
- 57
- total length
- 4,015,390 bp
- max length
- 331,771 bp
- mean length
- 70,446 bp
- N50
- 122,203
- L50
- 11
- N90
- 44,000
- L90
- 30
- N95
- 28,232
- L95
- 36
- %GC
- 41.90
- Ns
- 8
- gaps
- 8
- loci tagged
- 600
Assembly checks
| Check | Status | Warn/fail reason |
|---|---|---|
| Number of contigs | ||
| Assembly size | ||
| Minimum N50 | ||
| %GC |
Annotation quality metrics
Scheme completion
| Scheme | Scheme loci | Designated loci | Annotation | |
|---|---|---|---|---|
| Score | Status | |||
| cgMLST | 545 | 523 | 95 | |
Similar isolates (determined by classification schemes)
No similar isolates at any threshold. Show groups
Schemes and loci
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