Full information on isolate C216 (id:1326)
Provenance/primary metadata
- id
- 1326
- isolate
- C216
- alias
- C216
- biosample
- SAMN04488388
- accession number
- GCF_001584305.1
- clade
- P1
- species
- santarosai
- serogroup
- Unknown
- serovar
- Unknown
- isolation year
- 2014
- sequencing year
- 2016
- world region
- South America
- country
- Ecuador
- host
- human
- sample type
- Blood
- source lab
- GenBank
- sender
- Vallier SORDOILLET, CNR Leptospirose PASTEUR
- curator
- Jean-François Mariet, Institut Pasteur, Paris (E-mail: jean-francois.mariet@pasteur.fr)
- update history
- 10 updates show details
- date entered
- 2022-10-12
- datestamp
- 2024-04-25
Sequence bin
- contigs
- 95
- total length
- 3,983,958 bp
- max length
- 516,162 bp
- mean length
- 41,937 bp
- N50
- 220,819
- L50
- 6
- N90
- 36,829
- L90
- 23
- N95
- 18,327
- L95
- 31
- %GC
- 41.80
- Ns
- 0
- gaps
- 0
- loci tagged
- 600
Assembly checks
| Check | Status | Warn/fail reason |
|---|---|---|
| Number of contigs | ||
| Assembly size | ||
| Minimum N50 | ||
| %GC |
Annotation quality metrics
Scheme completion
| Scheme | Scheme loci | Designated loci | Annotation | |
|---|---|---|---|---|
| Score | Status | |||
| cgMLST | 545 | 522 | 95 | |
Similar isolates (determined by classification schemes)
No similar isolates at any threshold. Show groups
Schemes and loci
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Tools
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