Full information on isolate C216 (id:1326)

Provenance/primary metadata

id
1326
isolate
C216
alias
C216
biosample
SAMN04488388
accession number
GCF_001584305.1
clade
P1
species
santarosai
serogroup
Unknown
serovar
Unknown
isolation year
2014
sequencing year
2016
world region
South America
country
Ecuador
host
human
sample type
Blood
source lab
GenBank
sender
Vallier SORDOILLET, CNR Leptospirose PASTEUR
curator
Jean-Fran├žois Mariet, Institut Pasteur, Paris (E-mail: jean-francois.mariet@pasteur.fr)
update history
10 updates show details
date entered
2022-10-12
datestamp
2024-04-25

Sequence bin

contigs
95
total length
3,983,958 bp
max length
516,162 bp
mean length
41,937 bp
N50
220,819
L50
6
N90
36,829
L90
23
N95
18,327
L95
31
%GC
41.80
Ns
0
gaps
0
loci tagged
600

Show sequence bin

Assembly checks

CheckStatusWarn/fail reason
Number of contigs
Assembly size
Minimum N50
%GC

Annotation quality metrics

Scheme completion

SchemeScheme lociDesignated lociAnnotation
ScoreStatus
cgMLST54552295

Analysis

rMLST species identification

RankTaxonTaxonomySupportMatches
SPECIES Leptospira santarosai Spirochaetes > Spirochaetia > Leptospirales > Leptospiraceae > Leptospira > Leptospira santarosai 100%

Analysis performed: 2022-12-05

Similar isolates (determined by classification schemes)

No similar isolates at any threshold. Show groups

Schemes and loci

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Tools

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