Full information on isolate HAI1380 (id:1309)
Provenance/primary metadata
- id
- 1309
- isolate
- HAI1380
- alias
- HAI1380
- biosample
- SAMN02436497
- accession number
- GCA_000244655.3
- clade
- P1
- species
- santarosai
- serogroup
- Unknown
- serovar
- Unknown
- isolation year
- 2013
- sequencing year
- 2013
- world region
- South America
- country
- Peru
- city
- Iquitos
- host
- human
- sample type
- Unknown
- source lab
- GenBank
- sender
- Vallier SORDOILLET, CNR Leptospirose PASTEUR
- curator
- Jean-François Mariet, Institut Pasteur, Paris (E-mail: jean-francois.mariet@pasteur.fr)
- update history
- 10 updates show details
- date entered
- 2022-10-12
- datestamp
- 2024-04-25
Sequence bin
- contigs
- 38
- total length
- 3,990,385 bp
- max length
- 666,013 bp
- mean length
- 105,011 bp
- N50
- 199,635
- L50
- 7
- N90
- 68,862
- L90
- 17
- N95
- 56,320
- L95
- 20
- %GC
- 41.79
- Ns
- 0
- gaps
- 0
- loci tagged
- 599
Assembly checks
| Check | Status | Warn/fail reason |
|---|---|---|
| Number of contigs | ||
| Assembly size | ||
| Minimum N50 | ||
| %GC |
Annotation quality metrics
Scheme completion
| Scheme | Scheme loci | Designated loci | Annotation | |
|---|---|---|---|---|
| Score | Status | |||
| cgMLST | 545 | 528 | 96 | |
Similar isolates (determined by classification schemes)
No similar isolates at any threshold. Show groups
Schemes and loci
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