Full information on isolate AIM (id:1303)
Provenance/primary metadata
- id
- 1303
- isolate
- AIM
- alias
- AIM
- biosample
- SAMN02436390
- accession number
- GCA_000306455.2
- clade
- P1
- species
- santarosai
- serogroup
- Tarassovi
- serovar
- Unknown
- isolation year
- 2013
- sequencing year
- 2013
- world region
- South America
- country
- Colombia
- city
- Medellin
- host
- human
- sample type
- Unknown
- source lab
- GenBank
- sender
- Vallier SORDOILLET, CNR Leptospirose PASTEUR
- curator
- Jean-François Mariet, Institut Pasteur, Paris (E-mail: jean-francois.mariet@pasteur.fr)
- update history
- 11 updates show details
- date entered
- 2022-10-12
- datestamp
- 2024-04-25
Sequence bin
- contigs
- 72
- total length
- 4,071,195 bp
- max length
- 310,259 bp
- mean length
- 56,545 bp
- N50
- 120,673
- L50
- 10
- N90
- 34,366
- L90
- 30
- N95
- 16,255
- L95
- 39
- %GC
- 41.71
- Ns
- 2
- gaps
- 2
- loci tagged
- 600
Assembly checks
| Check | Status | Warn/fail reason |
|---|---|---|
| Number of contigs | ||
| Assembly size | ||
| Minimum N50 | ||
| %GC |
Annotation quality metrics
Scheme completion
| Scheme | Scheme loci | Designated loci | Annotation | |
|---|---|---|---|---|
| Score | Status | |||
| cgMLST | 545 | 536 | 98 | |
Similar isolates (determined by classification schemes)
No similar isolates at any threshold. Show groups
Schemes and loci
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Tools
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