Full information on isolate B208 (id:1247)
Provenance/primary metadata
- id
- 1247
- isolate
- B208
- biosample
- SAMN27363252
- clade
- P1
- species
- weilii
- serogroup
- Unknown
- serovar
- Unknown
- isolation year
- 2017
- sequencing year
- 2022
- world region
- South-eastern Asia
- country
- Malaysia
- city
- Kelantan
- host
- human
- sample type
- blood
- source lab
- GenBank
- sender
- Vallier SORDOILLET, CNR Leptospirose PASTEUR
- curator
- Jean-François Mariet, Institut Pasteur, Paris (E-mail: jean-francois.mariet@pasteur.fr)
- update history
- 11 updates show details
- date entered
- 2022-06-28
- datestamp
- 2024-04-25
Sequence bin
- contigs
- 220
- total length
- 4,298,595 bp
- max length
- 274,576 bp
- mean length
- 19,540 bp
- N50
- 106,460
- L50
- 14
- N90
- 29,050
- L90
- 44
- N95
- 13,541
- L95
- 55
- %GC
- 40.72
- Ns
- 0
- gaps
- 0
- loci tagged
- 600
Assembly checks
| Check | Status | Warn/fail reason |
|---|---|---|
| Number of contigs | ||
| Assembly size | ||
| Minimum N50 | ||
| %GC |
Annotation quality metrics
Scheme completion
| Scheme | Scheme loci | Designated loci | Annotation | |
|---|---|---|---|---|
| Score | Status | |||
| cgMLST | 545 | 539 | 98 | |
Analysis
rMLST species identification
Analysis performed: 2024-02-07
Similar isolates (determined by classification schemes)
No similar isolates at any threshold. Show groups
Schemes and loci
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Tools
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Analysis: