Sequence bin for F1

Contig summary statistics

Contigs
25
Total length
4,444,566
Minimum length
404
Maximum length
1,070,278
Mean length
177,783
N50
589,757
L50
3
N90
212,819
L90
7
N95
95,979
L95
9

FASTAEMBLGBKGFF3

SequenceSequencing methodOriginal designationLengthCommentsLocusStartEndDirectionAnnotation
219180QHCU01000001.11070278Leptospira yasudae strain F1 NODE_1_length_1070278_cov_205.529, whole genome shotgun sequenceLIC_RS06510 2345123678 EMBL GBK
LIC_RS06490 2716129113
LIC_RS06485 2911529627
LIC_RS06480 2962430730
LIC_RS06475 3081131833
LIC_RS06470 3202633588
LIC_RS06395 4524846651
LIC_RS06390 4667647536
LIC_RS06385 4755149062
LIC_RS06375 4961750138
LIC_RS06370 5014250444
LIC_RS06340 5445955262
LIC_RS03990 133829134656
LIC_RS03980 136224137810
LIC_RS03960 140338140829
LIC_RS03955 140826143618
BACT000009 (rpsI) 143706144104
BACT000042 (rplM) 144115144564
LIC_RS14120 158905160377
LIC_RS14115 160311162071
LIC_RS14110 162073164013
LIC_RS14095 164978166018
LIC_RS14090 166015167349
LIC_RS14085 167364167843
LIC_RS14080 167843169060
LIC_RS14075 169062169595
LIC_RS14070 169592170152
LIC_RS12210 186812187360
LIC_RS12250 190303192168
BACT000050 (rplU) 215325215639
BACT000056 (rpmA) 215952216206
LIC_RS14230 218337219587
x_2 224455225765
LIC_RS11760 231595232359
LIC_RS11765 232356233372
LIC_RS11770 233369234766
LIC_RS11780 235085235696
LIC_RS11785 235799236977
LIC_RS11805 240079241647
LIC_RS11815 242283242948
LIC_RS11825 243838244188
LIC_RS13970 274595275875
LIC_RS13975 276142276669
LIC_RS13980 276669277469
LIC_RS13170 289754291103
LIC_RS13405 393201394472
LIC_RS13420 398228398638
LIC_RS13425 398692399810
LIC_RS13470 404433405281
LIC_RS03820 409575410666
LIC_RS03275 417378418619
LIC_RS03270 418625418936
LIC_RS03515 430618431277
LIC_RS03510 431274431522
LIC_RS03505 431498432364
LIC_RS03500 432361433494
LIC_RS13145 442224443501
LIC_RS13135 444948446957
BACT000046 (rplQ) 448959449495
LIC_RS14615 449497450474
BACT000004 (rpsD) 450497451120
BACT000011 (rpsK) 451132451542
BACT000013 (rpsM) 451545451922
BACT000065 (rpmJ) 451925452038
secY 452837454219
BACT000044 (rplO) 454234454776
BACT000059 (rpmD) 454793454972
BACT000005 (rpsE) 454984455490
BACT000047 (rplR) 455492455860
BACT000035 (rplF) 455864456403
BACT000008 (rpsH) 456429456830
BACT000014 (rpsN) 456850457035
BACT000034 (rplE) 457055457603
BACT000053 (rplX) 457607457960
BACT000043 (rplN) 457960458352
BACT000017 (rpsQ) 458354458623
BACT000058 (rpmC) 458633458917
BACT000045 (rplP) 458914459327
BACT000003 (rpsC) 459350460027
BACT000051 (rplV) 460040460372
BACT000019 (rpsS) 460372460653
BACT000031 (rplB) 460661461500
LIC_RS14735 460661461500
BACT000052 (rplW) 461504461818
BACT000033 (rplD) 461815462450
BACT000032 (rplC) 462468463088
BACT000010 (rpsJ) 463101463409
LIC_RS14760 463422464627
BACT000007 (rpsG) 470072470545
BACT000012 (rpsL) 470562470936
LIC_RS03900 471063475283
BACT000036 (rplL) 479215479595
BACT000039 (rplJ) 479646480179
BACT000030 (rplA) 480207480899
BACT000040 (rplK) 480918481343
LIC_RS03870 481376481921
LIC_RS15120 498516500516
LIC_RS15130 501233501694
LIC_RS15195 511278512171
LIC_RS15200 512174512635
LIC_RS15215 514781515062
LIC_RS15220 515193516743
LIC_RS03705 538974541112
LIC_RS03700 541126542544
LIC_RS03235 571471571809
LIC_RS03230 571802572542
LIC_RS03225 572542573066
LIC_RS03220 573107573934
LIC_RS03215 573950574732
LIC_RS03210 574739574963
LIC_RS15280 579063580292
LIC_RS15275 580319581530
LIC_RS15250 583791584765
LIC_RS15980 611998613335
LIC_RS15925 618567619319
LIC_RS02255 722858724825
LIC_RS02250 725119725682
LIC_RS02240 726382727320
LIC_RS03110 753465753881
LIC_RS03010 779246781144
LIC_RS02035 789730790065
LIC_RS02030 790140792077
LIC_RS02025 792157792327
lfb1 824379824657
LIC_RS01495 899533899817
LIC_RS01500 899822901222
LIC_RS01555 908207908638
LIC_RS01550 908705909166
LIC_RS01545 909169909552
LIC_RS01635 911486912682
LIC_RS01645 913489913926
LIC_RS01660 916141916335
LIC_RS01680 920080921048
LIC_RS01690 921074922210
LIC_RS01745 929191930504
LIC_RS01760 931731934277
LIC_RS01210 935400936077
LIC_RS01205 936079937452
LIC_RS01150 945253948783
LIC_RS01160 948947949846
LIC_RS01095 961891963495
LIC_RS01090 963504964505
LIC_RS01070 966684967550
LIC_RS16975 974368975678
LIC_RS16980 975700976965
LIC_RS17045 982809984206
LIC_RS17065 987950988678
LIC_RS17070 988685989614
LIC_RS17110 998335998817
LIC_RS17115 998827999240
LIC_RS17180 10110481011776
LIC_RS17185 10117731012423
LIC_RS17225 10178081019196
LIC_RS17230 10191931021328
LIC_RS17340 10467651048015
LIC_RS17345 10480151048932
LIC_RS17350 10489291049666
LIC_RS17405 10541571055167
LIC_RS17410 10551641056207
LIC_RS17415 10562041057187
LIC_RS17420 10572091058171
LIC_RS17445 10627921063028
219176QHCU01000002.1728769Leptospira yasudae strain F1 NODE_2_length_728769_cov_223.751, whole genome shotgun sequenceLIC_RS17510 1924221206 EMBL GBK
LIC_RS17735 6353363786
LIC_RS17740 6378864239
LIC_RS17745 6429265560
LIC_RS17750 6559767507
LIC_RS17790 7164371972
LIC_RS17860 8288284246
LIC_RS17865 8442584772
LIC_RS17870 8476585358
LIC_RS17875 8535586929
LIC_RS17880 8693387781
LIC_RS17890 8935990612
LIC_RS17895 9060591414
LIC_RS17900 9153492553
LIC_RS17905 9255492901
LIC_RS17930 9468395557
LIC_RS17935 9556096321
LIC_RS17965 101481103388
LIC_RS17970 103530104453
LIC_RS00025 110108112033
LIC_RS00030 112052114556
LIC_RS00035 114561115517
LIC_RS00095 122919123662
LIC_RS00150 133130133978
LIC_RS00160 134987136963
LIC_RS00205 146114147082
LIC_RS00245 153792155111
LIC_RS00260 158434159279
LIC_RS00335 176938177459
LIC_RS00340 177460178242
LIC_RS00355 179422179790
LIC_RS00380 184461185306
LIC_RS00385 185358186062
LIC_RS00525 211955213019
LIC_RS00575 218817219437
LIC_RS00580 219434220066
LIC_RS00585 220063220788
LIC_RS00625 229060230016
LIC_RS00655 238604239542
LIC_RS00725 256743258200
BACT000063 (rpmH) 272404272565
LIC_RS00810 275052275762
LIC_RS00815 275755277125
LIC_RS01005 304869305807
LIC_RS16895 320757321728
LIC_RS16830 335251336408
LIC_RS16825 336476337867
LIC_RS16800 340197340595
LIC_RS16785 341757342922
LIC_RS16780 342964344434
LIC_RS16570 400751403600
LIC_RS16565 403681406089
LIC_RS16515 411092412429
LIC_RS16505 412815413477
LIC_RS01605 417934420828
LIC_RS01610 420868421260
LIC_RS16285 456314457171
LIC_RS16230 461258462037
LIC_RS16225 462034463005
LIC_RS16195 467692468693
LIC_RS16175 473462474796
LIC_RS16170 474810475352
LIC_RS03035 494107496872
LIC_RS02365 506200506979
LIC_RS02350 509046509837
BACT000020 (rpsT) 511528511797
LIC_RS02325 511931513313
LIC_RS02315 515152516198
LIC_RS02310 516215517825
LIC_RS01375 526561527226
LIC_RS01380 527226528281
LIC_RS01395 530333532643
LIC_RS01435 539776540555
LIC_RS02515 551108552457
LIC_RS02520 552557553282
LIC_RS02715 561385561933
LIC_RS02720 561957562925
LIC_RS02725 563041564159
LIC_RS02730 564378566312
LIC_RS02740 567001568027
LIC_RS16350 579519579806
LIC_RS16320 586096587397
LIC_RS01850 607784608752
LIC_RS01855 608749610581
LIC_RS01860 610588611181
LIC_RS01865 611308612267
LIC_RS01870 612279613040
LIC_RS02770 625963627852
LIC_RS02780 629389631824
LIC_RS15510 666330667346
LIC_RS02455 718574719854
LIC_RS02460 719844722533
219183QHCU01000003.1589757Leptospira yasudae strain F1 NODE_3_length_589757_cov_188.861, whole genome shotgun sequenceLIC_RS13755 1243813199 EMBL GBK
LIC_RS13760 1319614137
LIC_RS04145 5846959509
LIC_RS02110 8964490105
LIC_RS02115 9010690522
LIC_RS02120 9051592581
LIC_RS09545 108882109631
LIC_RS09535 110241111113
LIC_RS14430 224422225447
LIC_RS14425 225422226336
LIC_RS06110 244849246243
LIC_RS06115 246408248390
LIC_RS14305 251287251619
LIC_RS14300 251626252384
LIC_RS04520 267249270314
LIC_RS04525 270334271707
LIC_RS04530 271707272258
LIC_RS04540 272941274164
LIC_RS12680 301422302240
LIC_RS12675 302345303301
LIC_RS12665 305839307080
LIC_RS12660 307094308497
BACT000064 (rpmI) 318766318969
BACT000049 (rplT) 318969319322
LIC_RS12560 321123321617
LIC_RS12555 321617324862
LIC_RS12550 324868325941
LIC_RS12545 325944326306
LIC_RS12540 326324327109
LIC_RS12530 327632328723
BACT000001 (rpsA) 331683333365
LIC_RS12500 334136334753
BACT000061 (rpmF) 334846335046
LIC_RS12485 335052336059
LIC_RS18310 341237342001
LIC_RS18315 342443342676
LIC_RS18330 343992345083
LIC_RS18335 345083345964
LIC_RS05845 348586349491
LIC_RS05850 349493350308
LIC_RS05855 350310351419
LIC_RS05875 354358356298
LIC_RS05880 356419357057
LIC_RS05885 357054358436
LIC_RS04060 364136364855
LIC_RS04065 364879365826
LIC_RS04070 366041368821
LIC_RS04600 388340388756
LIC_RS04605 388757389176
LIC_RS13265 401488402744
LIC_RS13210 410156411004
LIC_RS13195 412743414332
LIC_RS13190 414377415252
LIC_RS13185 415265416437
LIC_RS14570 422122423048
LIC_RS13500 436297437751
BACT000060 (rpmE) 437771437974
LIC_RS13510 438033438824
LIC_RS13515 438821439009
x_1 442584444575
LIC_RS14530 459492460370
LIC_RS14520 461733463022
LIC_RS14490 467502468269
LIC_RS14485 468388468831
LIC_RS04340 475529476413
LIC_RS04345 476417477226
LIC_RS04350 477244478080
LIC_RS04360 479132479512
LIC_RS04365 479516479737
LIC_RS04370 479746480123
LIC_RS04375 480146480406
BACT000002 (rpsB) 480410481279
LIC_RS04385 481293481889
LIC_RS04395 482629483183
LIC_RS04400 483185483910
LIC_RS04405 483903484817
LIC_RS04410 484824485993
LIC_RS04415 485987487714
LIC_RS04420 487719489449
LIC_RS04425 489452490654
LIC_RS04430 490651491445
LIC_RS04440 491525493837
LIC_RS04445 493869495762
LIC_RS04450 495809496285
LIC_RS15535 497716498402
LIC_RS15540 498558501083
LIC_RS13880 513039514433
BACT000015 (rpsO) 518529518795
LIC_RS13855 518807520903
LIC_RS13025 531573532688
LIC_RS13020 532695534014
LIC_RS13015 534011534757
LIC_RS13010 534732535742
LIC_RS12995 536918538846
LIC_RS12990 538849539787
LIC_RS12980 541016541621
LIC_RS12935 548218549288
LIC_RS12945 550127550963
219172QHCU01000004.1566019Leptospira yasudae strain F1 NODE_4_length_566019_cov_174.548, whole genome shotgun sequenceLIC_RS12375 1590917021 EMBL GBK
LIC_RS12330 2510626965
LIC_RS12325 2705529829
LIC_RS12300 3505836479
LIC_RS05500 4025141267
LIC_RS05505 4132142871
LIC_RS05530 4703948205
LIC_RS05535 4829048613
LIC_RS05555 5186153795
LIC_RS11625 8412784795
LIC_RS11595 8841989555
LIC_RS11590 8957191853
LIC_RS05750 129300130148
LIC_RS06005 148862149605
LIC_RS06015 150835151341
LIC_RS06140 157540158532
LIC_RS06700 183572184281
LIC_RS06705 184341185600
LIC_RS06740 190452190919
LIC_RS06745 191065192183
LIC_RS06815 235310235798
LIC_RS06825 238158239045
LIC_RS06850 242978244615
LIC_RS06855 244629244919
LIC_RS06950 253979255139
LIC_RS07020 274748275077
LIC_RS07025 275221276285
LIC_RS07035 277137277940
LIC_RS07040 277937278200
LIC_RS07045 278207278986
LIC_RS07055 280300282423
LIC_RS07060 282475283779
LIC_RS07075 285355286155
LIC_RS07080 286177288165
LIC_RS07095 289704289985
LIC_RS07115 292567293214
LIC_RS07125 293949295313
LIC_RS07180 303892306006
LIC_RS07190 306241307542
LIC_RS07195 307712309715
LIC_RS07200 309918310187
LIC_RS07210 313040314149
LIC_RS07215 314602316311
LIC_RS07220 316308316793
LIC_RS07240 318841320590
LIC_RS07260 322819323412
LIC_RS07265 323427324689
LIC_RS07445 372359373639
LIC_RS07450 373655374512
LIC_RS07455 374731378087
LIC_RS07470 379763382753
LIC_RS07475 382755384170
LIC_RS07480 384197384487
LIC_RS07485 384484385947
LIC_RS07490 385944386714
LIC_RS10365 388217388869
LIC_RS10360 388960390375
LIC_RS10355 390372391337
LIC_RS10350 391353392207
LIC_RS10345 392289393596
LIC_RS10315 396167398143
LIC_RS09940 408481409038
LIC_RS09945 409050410063
LIC_RS09955 410457411050
LIC_RS10265 414942416747
LIC_RS10220 419943421856
LIC_RS10215 421875422555
LIC_RS07580 446108447004
LIC_RS07640 465835466587
LIC_RS07680 476141476335
LIC_RS07685 476342477100
LIC_RS08265 485064486821
LIC_RS08270 486836487807
LIC_RS08280 488314489084
LIC_RS08300 492155492760
LIC_RS08305 492764493213
LIC_RS08345 502071504125
LIC_RS08405 515054516223
LIC_RS08445 521275521925
LIC_RS08460 523650525185
LIC_RS08465 525189525815
LIC_RS08470 526119526567
LIC_RS08500 529302530447
219166QHCU01000005.1454798Leptospira yasudae strain F1 NODE_5_length_454798_cov_167.444, whole genome shotgun sequenceLIC_RS10100 8916089474 EMBL GBK
LIC_RS10095 8950091653
LIC_RS10090 9167292802
LIC_RS10065 9659197163
LIC_RS09925 108465109148
LIC_RS09905 113046114455
LIC_RS09790 138674140200
LIC_RS09785 140203140991
LIC_RS09685 152178153197
LIC_RS09675 154662155636
LIC_RS09605 161608162846
LIC_RS09600 162912164174
LIC_RS09590 164811165662
LIC_RS09475 169568170317
LIC_RS09470 170349171113
LIC_RS09465 171119171898
LIC_RS09460 171895173424
LIC_RS09450 174712175329
LIC_RS09420 181077181904
LIC_RS09415 182042183337
LIC_RS09405 184254185186
LIC_RS09400 185188186135
LIC_RS09385 187208188620
LIC_RS09380 188617189492
LIC_RS09365 191148192173
LIC_RS09350 193922194188
LIC_RS09305 204022204609
LIC_RS09290 207029208426
LIC_RS09280 209085210086
LIC_RS09250 214891215226
LIC_RS09245 215223217460
LIC_RS09230 220767221798
LIC_RS09225 221795222040
LIC_RS09215 222354222581
LIC_RS09205 222958223731
LIC_RS09200 223728224645
LIC_RS09175 228466229956
LIC_RS09150 233203234627
LIC_RS09145 234667235656
LIC_RS09135 236846238555
LIC_RS09130 238624239841
LIC_RS09105 244308244961
LIC_RS09090 246676247656
LIC_RS09070 250809251873
LIC_RS09065 252254252430
LIC_RS09030 258068258475
LIC_RS09025 258489259565
LIC_RS09020 259584260804
BACT000057 (rpmB) 265513265797
LIC_RS08940 277055278365
LIC_RS08935 278507279568
LIC_RS08930 279565280213
LIC_RS08760 322417325332
LIC_RS08735 328586329977
BACT000021 (rpsU) 338134338343
LIC_RS08685 338403338849
LIC_RS08675 340681342441
LIC_RS08660 344398345615
LIC_RS07745 351057351593
LIC_RS07760 352678352986
LIC_RS07775 356217357869
LIC_RS07780 357875360622
LIC_RS07795 360781361830
LIC_RS07805 362327362842
LIC_RS07825 367992368354
LIC_RS07855 380841381692
LIC_RS07865 382028382579
LIC_RS07890 387607388083
LIC_RS07895 388184389806
LIC_RS07900 389803390666
LIC_RS07915 392640393365
LIC_RS07920 393362394783
LIC_RS07925 394786395751
LIC_RS07930 395723395986
LIC_RS07935 396002397792
LIC_RS07940 397802399148
LIC_RS07965 403891404535
BACT000016 (rpsP) 404669404935
LIC_RS07985 405678406346
BACT000048 (rplS) 406343406771
LIC_RS08040 413533414438
LIC_RS08045 414386416227
LIC_RS08050 416230417903
LIC_RS08055 417909419135
LIC_RS08060 419157419633
LIC_RS08090 424218424745
LIC_RS08145 433394434662
LIC_RS08150 434668435798
LIC_RS08175 439020440570
LIC_RS08180 440558441130
LIC_RS08190 442159442701
LIC_RS08210 445831446661
LIC_RS08220 446986447864
LIC_RS08225 447866448909
LIC_RS08230 448956449645
219179QHCU01000006.1381410Leptospira yasudae strain F1 NODE_6_length_381410_cov_164.176, whole genome shotgun sequenceLIC_RS18410 2951730827 EMBL GBK
LIC_RS18435 3651137806
LIC_RS18440 3781039558
LIC_RS18445 3971240620
LIC_RS18490 5323053769
LIC_RS18495 5376654617
LIC_RS18505 5532356549
LIC_RS19065 7465575707
LIC_RS19060 7572277920
BACT000062 (rpmG) 9309393257
LIC_RS18835 105398106813
LIC_RS18710 133370134257
LIC_RS18705 134519136129
LIC_RS18700 136126136602
LIC_RS18695 136595138493
LIC_RS18565 182739183284
LIC_RS19220 221649222491
LIC_RS19290 248578249525
LIC_RS19305 250600251325
LIC_RS19340 252549252827
LIC_RS19375 254869256335
LIC_RS19385 258360259409
LIC_RS19420 268422269435
LIC_RS19435 271794272645
LIC_RS18020 282356283309
LIC_RS18025 283306284639
LIC_RS18040 286230287252
LIC_RS18045 287249288598
LIC_RS18075 293457294374
LIC_RS18080 294367295074
LIC_RS18115 300347301624
LIC_RS18170 307079308107
LIC_RS18185 309810310748
LIC_RS18205 314147315976
219185QHCU01000007.1212819Leptospira yasudae strain F1 NODE_7_length_212819_cov_186.082, whole genome shotgun sequenceLIC_RS06535 1476216051 EMBL GBK
LIC_RS06550 1766618547
LIC_RS06555 1869119806
LIC_RS11500 2796929567
LIC_RS11495 2956931386
LIC_RS11470 3467834926
LIC_RS11460 3580436865
LIC_RS11445 3784138305
LIC_RS11320 4899351014
LIC_RS11310 5137452390
BACT000006 (rpsF) 142016142291
LIC_RS10785 142284142727
BACT000018 (rpsR) 142740143051
BACT000038 (rplI) 143061143510
LIC_RS10770 143528144856
LIC_RS10765 144899146704
LIC_RS10755 147700150120
LIC_RS10710 156125157117
LIC_RS10705 157117158250
LIC_RS10675 160471161661
LIC_RS10670 161665162672
LIC_RS10595 178634178984
LIC_RS10590 178997179530
219174QHCU01000008.1140813Leptospira yasudae strain F1 NODE_8_length_140813_cov_198.357, whole genome shotgun sequenceLIC_RS04720 9291793876 EMBL GBK
219164QHCU01000009.195979Leptospira yasudae strain F1 NODE_9_length_95979_cov_184.542, whole genome shotgun sequenceLIC_RS05190 55946076 EMBL GBK
LIC_RS05185 60737197
LIC_RS05180 72687603
LIC_RS05225 1052712551
LIC_RS05230 1256414372
LIC_RS05300 2501825359
LIC_RS05355 3812739233
LIC_RS05360 3927140575
LIC_RS12770 7574676519
219177 QHCU01000010.1 74771 Leptospira yasudae strain F1 NODE_10_length_74771_cov_45.8546, whole genome shotgun sequence
219162 QHCU01000011.1 73166 Leptospira yasudae strain F1 NODE_11_length_73166_cov_173.929, whole genome shotgun sequence
219175 QHCU01000012.1 19099 Leptospira yasudae strain F1 NODE_12_length_19099_cov_187.862, whole genome shotgun sequence
219168 QHCU01000013.1 16080 Leptospira yasudae strain F1 NODE_13_length_16080_cov_179.139, whole genome shotgun sequence
219163 QHCU01000014.1 3685 Leptospira yasudae strain F1 NODE_14_length_3685_cov_301.749, whole genome shotgun sequence
219184 QHCU01000015.1 3315 Leptospira yasudae strain F1 NODE_15_length_3315_cov_357.154, whole genome shotgun sequence
219186 QHCU01000016.1 2480 Leptospira yasudae strain F1 NODE_16_length_2480_cov_171.905, whole genome shotgun sequence
219171 QHCU01000017.1 2385 Leptospira yasudae strain F1 NODE_17_length_2385_cov_231.739, whole genome shotgun sequence
219165QHCU01000018.11956Leptospira yasudae strain F1 NODE_18_length_1956_cov_324.219, whole genome shotgun sequence16S_dzianensis 3521856 EMBL GBK
219178 QHCU01000019.1 1891 Leptospira yasudae strain F1 NODE_19_length_1891_cov_206.528, whole genome shotgun sequence
219170 QHCU01000020.1 1618 Leptospira yasudae strain F1 NODE_20_length_1618_cov_198.264, whole genome shotgun sequence
219173 QHCU01000021.1 1021 Leptospira yasudae strain F1 NODE_22_length_1021_cov_605.713, whole genome shotgun sequence
219167 QHCU01000022.1 925 Leptospira yasudae strain F1 NODE_23_length_925_cov_368.409, whole genome shotgun sequence
219169 QHCU01000023.1 585 Leptospira yasudae strain F1 NODE_24_length_585_cov_191.876, whole genome shotgun sequence
219182 QHCU01000024.1 543 Leptospira yasudae strain F1 NODE_25_length_543_cov_174.901, whole genome shotgun sequence
219181 QHCU01000025.1 404 Leptospira yasudae strain F1 NODE_26_length_404_cov_610.789, whole genome shotgun sequence