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Sequence bin for YH101

Contig summary statistics

Contigs
24
Total length
3,951,395
Minimum length
664
Maximum length
923,341
Mean length
164,642
N50
715,814
L50
3
N90
260,492
L90
7
N95
161,513
L95
8

FASTAEMBLGBKGFF3

SequenceSequencing methodOriginal designationLengthCommentsLocusStartEndDirectionAnnotation
399139IlluminaNZ_BFBB01000008.1923341Leptospira ryugenii strain YH101 LRY_contig_08, whole genome shotgun sequenceLIC_RS06475 1568616708 → EMBL GBK
LIC_RS06490 5367155608 →
LIC_RS06510 8750087721 →
LIC_RS17410 9855599604 ←
LIC_RS17405 99601100611 ←
LIC_RS15250 104713105699 ←
BACT000063 (rpmH) 135349135510 →
LIC_RS00810 138040138762 →
LIC_RS02025 153146153313 →
LIC_RS02455 178670179947 ←
LIC_RS02460 179937182627 ←
LIC_RS02240 193709194650 →
LIC_RS02250 195321195884 →
LIC_RS02255 195912197861 →
LIC_RS16895 209702210616 →
LIC_RS03225 220931221458 ←
LIC_RS03220 221460222287 ←
LIC_RS03215 222296223078 ←
LIC_RS03210 223080223295 ←
LIC_RS01495 237048237329 ←
LIC_RS16780 239161240588 ←
LIC_RS04605 262996263415 →
LIC_RS04600 263415263837 →
LIC_RS17115 330058330471 →
LIC_RS03010 352466354361 ←
LIC_RS00150 377301378146 ←
LIC_RS00095 388603389340 ←
LIC_RS00025 398379400298 ←
LIC_RS17965 406643408517 →
LIC_RS17935 410073410834 →
LIC_RS17905 413963414316 ←
LIC_RS17890 416207417463 →
LIC_RS17875 419669421207 →
LIC_RS02740 484105485136 →
LIC_RS02730 485747487669 →
LIC_RS02725 487682488797 →
LIC_RS15510 501951502973 →
LIC_RS16350 525063525350 ←
LIC_RS00525 571237572298 →
LIC_RS00355 600689601039 →
LIC_RS16830 625028626182 ←
LIC_RS16825 626229627593 ←
LIC_RS17750 634730636643 →
LIC_RS17735 638388638636 →
LIC_RS05750 644189645037 ←
LIC_RS01610 664740665132 ←
LIC_RS03110 705841706260 ←
LIC_RS16195 780399781403 →
LIC_RS16225 784679785647 ←
LIC_RS06950 841105842271 →
LIC_RS06005 881797882537 →
LIC_RS15220 915296916837 →
LIC_RS15215 916910917188 →
LIC_RS15200 919295919756 →
399140IlluminaNZ_BFBB01000003.1845008Leptospira ryugenii strain YH101 LRY_contig_03, whole genome shotgun sequenceLIC_RS11805 1376915313 ← EMBL GBK
LIC_RS11815 1591216583 →
LIC_RS08470 4437444820 ←
LIC_RS08460 4553647077 →
LIC_RS08445 4854749191 →
LIC_RS13420 150580150984 →
LIC_RS13425 150999152123 →
LIC_RS12300 161983163443 →
LIC_RS12995 181842183776 ←
LIC_RS13025 187865188956 ←
LIC_RS03960 192614193111 ←
BACT000009 (rpsI) 197164197559 ←
BACT000042 (rplM) 197560198012 ←
LIC_RS05500 200724201728 →
LIC_RS04540 211395212645 ←
LIC_RS04530 213247213813 ←
LIC_RS04525 213815215188 ←
LIC_RS04520 215205218330 ←
LIC_RS11590 248196250448 ←
LIC_RS05535 262433262759 →
LIC_RS05530 262844264010 →
LIC_RS11760 268379269134 ←
LIC_RS11780 271858272466 ←
LIC_RS14110 285446287377 ←
LIC_RS14095 288302289372 ←
LIC_RS14085 290690291178 ←
LIC_RS14080 291178292398 ←
LIC_RS14070 292934293494 ←
LIC_RS08175 296626298155 ←
LIC_RS10590 362427362963 →
LIC_RS10595 362960363316 →
LIC_RS10100 374395374706 →
LIC_RS10095 374725376878 →
LIC_RS10090 376926378056 →
LIC_RS10065 385211385786 ←
LIC_RS09030 395701396111 →
LIC_RS05225 402705404756 ←
LIC_RS05180 407191407526 ←
LIC_RS05185 407620408735 ←
LIC_RS05190 408735409211 ←
LIC_RS04070 411676414441 ←
LIC_RS04060 415631416344 ←
LIC_RS06855 422290422580 →
LIC_RS06850 422602424251 →
LIC_RS08230 426638427330 ←
LIC_RS08210 429650430486 →
LIC_RS07580 434767435675 ←
LIC_RS07220 437328437816 ←
LIC_RS01635 442624443721 →
LIC_RS01645 444357444797 →
LIC_RS12665 459195460424 →
LIC_RS12660 460426461832 →
LIC_RS14485 467961468401 ←
LIC_RS14520 472869474158 →
LIC_RS13510 481843482637 ←
BACT000060 (rpmE) 482686482886 ←
LIC_RS13500 482897484303 ←
BACT000057 (rpmB) 493220493501 ←
LIC_RS09150 497391498818 →
LIC_RS12675 502549503541 ←
LIC_RS12545 524547524909 ←
BACT000049 (rplT) 531344531697 ←
BACT000064 (rpmI) 531701531901 ←
LIC_RS06140 570249571238 →
LIC_RS07195 630115632115 ←
LIC_RS07190 632230633534 →
LIC_RS00580 638846639472 ←
LIC_RS13970 643962645251 →
LIC_RS16175 649254650627 ←
LIC_RS17225 734674736044 ←
LIC_RS02365 743264744040 →
LIC_RS16505 754710755351 →
LIC_RS04720 765607766560 ←
399141IlluminaNZ_BFBB01000002.1715814Leptospira ryugenii strain YH101 LRY_contig_02, whole genome shotgun sequenceLIC_RS09790 6085662382 → EMBL GBK
LIC_RS09605 99741100967 ←
LIC_RS09600 101019102263 →
BACT000006 (rpsF) 116890117165 →
BACT000018 (rpsR) 117604117942 →
BACT000038 (rplI) 117952118398 →
LIC_RS10765 119768121573 →
LIC_RS10755 122590124962 →
LIC_RS10675 134374135564 ←
LIC_RS10670 135566136573 ←
LIC_RS13190 163497164387 ←
LIC_RS13185 164401165570 ←
LIC_RS08280 268100268867 ←
BACT000040 (rplK) 270803271231 →
BACT000030 (rplA) 271253271945 →
BACT000039 (rplJ) 271956272486 →
BACT000036 (rplL) 272529272912 →
LIC_RS03900 276739281055 →
BACT000012 (rpsL) 281157281531 →
BACT000007 (rpsG) 281546282019 →
LIC_RS14760 284021285226 →
BACT000010 (rpsJ) 285231285539 →
BACT000032 (rplC) 285552286175 →
BACT000033 (rplD) 286184286819 →
BACT000052 (rplW) 286824287129 →
BACT000031 (rplB) 287132287968 →
LIC_RS14735 287132287968 →
BACT000019 (rpsS) 287982288260 →
BACT000051 (rplV) 288270288620 →
BACT000003 (rpsC) 288624289301 →
BACT000045 (rplP) 289324289737 →
BACT000058 (rpmC) 289734290006 →
BACT000017 (rpsQ) 290010290279 →
BACT000043 (rplN) 290276290668 →
BACT000053 (rplX) 290668291051 →
BACT000034 (rplE) 291054291608 →
BACT000014 (rpsN) 291618291803 →
BACT000008 (rpsH) 291826292224 →
BACT000035 (rplF) 292245292784 →
BACT000047 (rplR) 292790293158 →
BACT000005 (rpsE) 293160293666 →
BACT000059 (rpmD) 293677293859 →
BACT000044 (rplO) 293862294401 →
BACT000065 (rpmJ) 296590296703 →
BACT000013 (rpsM) 296707297084 →
BACT000011 (rpsK) 297095297508 →
BACT000004 (rpsD) 297519298151 →
LIC_RS14615 298182299159 →
BACT000046 (rplQ) 299161299670 →
LIC_RS13135 299773301794 ←
LIC_RS13145 302950304224 →
LIC_RS03500 310108311238 →
LIC_RS03510 312074312322 →
LIC_RS03275 318000319244 →
LIC_RS09685 336837337856 ←
BACT000021 (rpsU) 345281345499 →
LIC_RS08675 347828349594 →
LIC_RS08660 352446353672 →
LIC_RS07745 358185358724 ←
LIC_RS07760 358987359298 →
LIC_RS07780 364095366851 →
LIC_RS07825 373896374261 ←
LIC_RS09405 391476392396 ←
LIC_RS09365 398347399372 →
LIC_RS09290 410733412127 →
LIC_RS07895 434967436589 →
LIC_RS07920 440135441556 →
LIC_RS07925 441561442523 →
BACT000016 (rpsP) 451411451671 →
LIC_RS07985 452436453089 →
BACT000048 (rplS) 453098453514 →
LIC_RS08050 462685464361 →
LIC_RS08055 464363465589 →
LIC_RS10220 479329481254 →
LIC_RS10265 483916485721 ←
LIC_RS09955 487614488222 →
LIC_RS10355 504270505238 →
LIC_RS07475 512786514186 ←
LIC_RS12210 535457536014 ←
BACT000050 (rplU) 560772561080 →
BACT000056 (rpmA) 561413561670 →
LIC_RS06740 575508575984 →
LIC_RS06700 581509582183 →
LIC_RS07455 611940615392 ←
LIC_RS09465 661056661832 →
LIC_RS09470 661841662629 →
LIC_RS09475 662667663440 →
LIC_RS07855 668388669236 →
LIC_RS13855 698457700547 ←
BACT000015 (rpsO) 700553700819 ←
LIC_RS13880 704844706238 ←
399137IlluminaNZ_BFBB01000004.1332755Leptospira ryugenii strain YH101 LRY_contig_04, whole genome shotgun sequenceLIC_RS09065 3307233251 ← EMBL GBK
LIC_RS16975 6624967559 →
LIC_RS16980 6757468839 →
LIC_RS06550 117420118298 →
LIC_RS02325 150641152017 ←
BACT000020 (rpsT) 152305152580 ←
LIC_RS17065 162289163020 ←
LIC_RS11460 193647194714 ←
LIC_RS11495 198330200174 →
399142IlluminaNZ_BFBB01000007.1316129Leptospira ryugenii strain YH101 LRY_contig_07, whole genome shotgun sequenceLIC_RS07055 1220914326 ← EMBL GBK
LIC_RS07040 1622816491 ←
LIC_RS07025 1806419140 ←
LIC_RS01205 4902650378 ←
LIC_RS18315 5639156624 ←
LIC_RS18310 5860559366 ←
BACT000061 (rpmF) 6044260642 ←
LIC_RS12500 6071161325 ←
BACT000001 (rpsA) 6208763787 ←
LIC_RS15535 6849769183 ←
LIC_RS04450 7016870659 ←
LIC_RS04440 7261274939 ←
LIC_RS04430 7503875838 ←
LIC_RS04410 8203283189 ←
LIC_RS04405 8320884119 ←
LIC_RS04400 8411684829 ←
LIC_RS04385 8612486720 ←
BACT000002 (rpsB) 8672087604 ←
LIC_RS01095 148614150230 ←
LIC_RS03235 159150159500 ←
LIC_RS07640 170081170842 ←
LIC_RS07680 180995181198 →
399135IlluminaNZ_BFBB01000009.1277983Leptospira ryugenii strain YH101 LRY_contig_09, whole genome shotgun sequenceLIC_RS18710 2094521838 → EMBL GBK
LIC_RS19220 4382444669 ←
LIC_RS19060 5146153596 →
LIC_RS18505 7305574281 ←
LIC_RS18495 7485275706 →
LIC_RS18205 129457131292 →
LIC_RS19385 149714150763 →
LIC_RS19375 152745154178 →
LIC_RS18835 162687164186 ←
LIC_RS19340 182893183177 ←
LIC_RS19305 183180183905 ←
LIC_RS18410 208346209665 →
LIC_RS18445 218055218927 ←
BACT000062 (rpmG) 224075224236 →
399130IlluminaNZ_BFBB01000005.1260492Leptospira ryugenii strain YH101 LRY_contig_05, whole genome shotgun sequenceLIC_RS07265 7000371280 ← EMBL GBK
LIC_RS07260 7129271891 ←
LIC_RS07080 9574497738 ←
LIC_RS07075 9774598545 ←
LIC_RS12770 116161116931 ←
LIC_RS05360 121606122907 ←
LIC_RS05355 122918124045 ←
LIC_RS05300 136707137048 ←
LIC_RS06395 152622154028 ←
LIC_RS06390 154047154916 ←
LIC_RS06385 154928156442 ←
LIC_RS06375 156998157522 ←
LIC_RS06370 157524157814 ←
LIC_RS06340 161675162466 →
LIC_RS05880 181151181789 ←
LIC_RS01555 201714202145 →
LIC_RS01550 202157202618 →
LIC_RS04340 221686222570 ←
399126IlluminaNZ_BFBB01000001.1161513Leptospira ryugenii strain YH101 LRY_contig_01, whole genome shotgun sequenceLIC_RS01865 9406795026 ← EMBL GBK
LIC_RS01870 9503895799 ←
LIC_RS09090 106248107231 →
LIC_RS01375 109621110265 ←
LIC_RS01395 113351115468 ←
LIC_RS17340 140003141235 ←
LIC_RS12935 142880143944 ←
LIC_RS06110 149091150485 →
LIC_RS14305 157439157771 →
399132 Illumina NZ_BFBB01000010.1 67611 Leptospira ryugenii strain YH101 LRY_contig_10, whole genome shotgun sequence
399123 Illumina NZ_BFBB01000011.1 12748 Leptospira ryugenii strain YH101 LRY_contig_11, whole genome shotgun sequence
399133 Illumina NZ_BFBB01000012.1 6990 Leptospira ryugenii strain YH101 LRY_contig_12, whole genome shotgun sequence
399136 Illumina NZ_BFBB01000013.1 5090 Leptospira ryugenii strain YH101 LRY_contig_13, whole genome shotgun sequence
399143 Illumina NZ_BFBB01000014.1 4226 Leptospira ryugenii strain YH101 LRY_contig_14, whole genome shotgun sequence
399129 Illumina NZ_BFBB01000006.1 3178 Leptospira ryugenii strain YH101 LRY_contig_06, whole genome shotgun sequence
399122 Illumina NZ_BFBB01000015.1 3175 Leptospira ryugenii strain YH101 LRY_contig_15, whole genome shotgun sequence
399124 Illumina NZ_BFBB01000016.1 3022 Leptospira ryugenii strain YH101 LRY_contig_16, whole genome shotgun sequence
399144 Illumina NZ_BFBB01000017.1 2652 Leptospira ryugenii strain YH101 LRY_contig_17, whole genome shotgun sequence
399134 Illumina NZ_BFBB01000018.1 2072 Leptospira ryugenii strain YH101 LRY_contig_18, whole genome shotgun sequence
399131IlluminaNZ_BFBB01000019.11778Leptospira ryugenii strain YH101 LRY_contig_19, whole genome shotgun sequence16S_ryugenii 551550 ← EMBL GBK
rrs2_3 (rrs2_3) 10141453 ←
399128 Illumina NZ_BFBB01000020.1 1630 Leptospira ryugenii strain YH101 LRY_contig_20, whole genome shotgun sequence
399121 Illumina NZ_BFBB01000021.1 1621 Leptospira ryugenii strain YH101 LRY_contig_21, whole genome shotgun sequence
399127 Illumina NZ_BFBB01000022.1 1228 Leptospira ryugenii strain YH101 LRY_contig_22, whole genome shotgun sequence
399125 Illumina NZ_BFBB01000023.1 675 Leptospira ryugenii strain YH101 LRY_contig_23, whole genome shotgun sequence
399138 Illumina NZ_BFBB01000024.1 664 Leptospira ryugenii strain YH101 LRY_contig_24, whole genome shotgun sequence