Sequence bin for FH1-B-B1

Contig summary statistics

Contigs
49
Total length
3,985,918
Minimum length
530
Maximum length
819,540
Mean length
81,346
N50
332,586
L50
4
N90
65,029
L90
15
N95
36,734
L95
19

FASTAEMBLGBKGFF3

SequenceSequencing methodOriginal designationLengthCommentsLocusStartEndDirectionAnnotation
398962IlluminaNZ_NPDZ01000001.1819540Leptospira perolatii strain FH1-B-B1 contig_1, whole genome shotgun sequenceLIC_RS00525 3885939923 EMBL GBK
LIC_RS00385 6324063950
LIC_RS00380 6396864816
LIC_RS00335 7230572835
LIC_RS00245 104023105243
LIC_RS00205 109982110950
LIC_RS00150 123106123948
LIC_RS00030 140867143380
LIC_RS00025 143413145326
LIC_RS17970 151012151935
LIC_RS17935 157759158520
LIC_RS17905 160235160582
LIC_RS17900 160582161577
LIC_RS17895 161708162514
LIC_RS17880 165216166073
LIC_RS17875 166077167648
LIC_RS17870 167650168243
LIC_RS17865 168236168583
LIC_RS00575 178300178881
LIC_RS17345 257735258643
LIC_RS17230 284878287028
LIC_RS17225 287013288404
LIC_RS17210 289572291131
LIC_RS17115 320709321122
LIC_RS17110 321132321614
LIC_RS17070 325949326881
LIC_RS17065 326892327620
LIC_RS17045 331294332694
LIC_RS16980 339652340917
LIC_RS16975 340937342247
LIC_RS01070 346596347462
LIC_RS01160 362556363461
LIC_RS01205 374239375621
LIC_RS01760 377330379870
LIC_RS01645 394410394844
LIC_RS01635 395546396589
LIC_RS01550 399112399573
LIC_RS01555 399614400045
LIC_RS01500 402317403711
LIC_RS01495 403719404000
LIC_RS02740 432924433952
LIC_RS02730 434601436535
LIC_RS02720 437684438643
LIC_RS02715 438651439205
LIC_RS01860 509580510170
LIC_RS01865 510203511162
LIC_RS01870 511174511935
LIC_RS02770 529016530914
LIC_RS15510 548563549582
LIC_RS03210 599509599733
LIC_RS03215 599740600522
LIC_RS03220 600552601379
LIC_RS03225 601400601924
LIC_RS15250 665440666411
LIC_RS15220 733607735151
LIC_RS15215 735240735521
LIC_RS15195 738023738925
LIC_RS03870 758038758583
BACT000040 (rplK) 758627759055
BACT000030 (rplA) 759071759763
BACT000039 (rplJ) 759791760324
BACT000036 (rplL) 760376760756
LIC_RS03900 764580768785
BACT000012 (rpsL) 768864769238
BACT000007 (rpsG) 769251769724
LIC_RS04720 800116801075
398966IlluminaNZ_NPDZ01000002.1491093Leptospira perolatii strain FH1-B-B1 contig_2, whole genome shotgun sequenceLIC_RS06005 3196932712 EMBL GBK
LIC_RS06015 3385034362
LIC_RS06140 4023141223
LIC_RS06740 6540565872
LIC_RS06550 140297141178
LIC_RS11470 156269156520
LIC_RS11460 157394158455
LIC_RS11445 159490159954
LIC_RS06815 201926202396
LIC_RS07450 425416426267
LIC_RS07475 434337435752
LIC_RS07480 435774436064
LIC_RS07490 437521438288
LIC_RS10355 445537446502
LIC_RS10350 446519447373
LIC_RS10345 447454448761
LIC_RS09945 463308464309
LIC_RS09955 464704465300
LIC_RS10220 473396475312
LIC_RS10215 475316476005
398977IlluminaNZ_NPDZ01000003.1352179Leptospira perolatii strain FH1-B-B1 contig_3, whole genome shotgun sequenceLIC_RS18705 108935110539 EMBL GBK
LIC_RS18710 110619111512
LIC_RS18835 131423132922
BACT000062 (rpmG) 144689144841
LIC_RS18495 173195174046
LIC_RS18490 174043174582
LIC_RS18445 185654186526
LIC_RS18440 186625188373
LIC_RS18410 195345196658
LIC_RS18205 248459250288
LIC_RS18185 253629254573
LIC_RS18170 256274257284
LIC_RS18080 268656269357
LIC_RS18075 269341270267
LIC_RS18045 276321277670
LIC_RS18040 277667278689
LIC_RS19420 295344296375
LIC_RS19375 307057308487
LIC_RS19305 311083311808
LIC_RS19220 327904328746
398942IlluminaNZ_NPDZ01000004.1332586Leptospira perolatii strain FH1-B-B1 contig_4, whole genome shotgun sequenceLIC_RS05360 5012151425 EMBL GBK
LIC_RS05355 5144652546
LIC_RS05300 6503865379
LIC_RS05225 8284984882
LIC_RS05180 8769588030
LIC_RS05185 8810089224
LIC_RS05190 8922189709
LIC_RS04070 9251195291
LIC_RS04065 9566496617
LIC_RS04060 9664197340
LIC_RS05885 99852101225
LIC_RS05855 106520107623
LIC_RS05845 108450109442
LIC_RS18335 110941111810
LIC_RS18315 114207114440
LIC_RS18310 114939115703
BACT000061 (rpmF) 118246118446
BACT000001 (rpsA) 119888121564
LIC_RS12530 124536125627
LIC_RS12545 126941127303
BACT000049 (rplT) 134287134640
BACT000064 (rpmI) 134640134843
LIC_RS06395 149340150743
LIC_RS06390 150766151626
LIC_RS06385 151640153154
LIC_RS06375 153706154230
LIC_RS06370 154233154526
LIC_RS14305 175365175703
LIC_RS06110 181916183310
LIC_RS14430 195847196878
BACT000050 (rplU) 240114240425
BACT000056 (rpmA) 240745240999
LIC_RS11765 277635278651
LIC_RS11770 278655280025
LIC_RS11780 280400281008
LIC_RS11805 285155286717
LIC_RS11815 287310287975
398948IlluminaNZ_NPDZ01000005.1263630Leptospira perolatii strain FH1-B-B1 contig_5, whole genome shotgun sequenceLIC_RS10590 46375170 EMBL GBK
LIC_RS06850 1529316930
LIC_RS06855 1695317240
LIC_RS06950 2408025240
LIC_RS07040 4698447247
LIC_RS07045 4725748039
LIC_RS07075 5431655116
LIC_RS07095 5877159052
LIC_RS07115 6009560736
LIC_RS07125 6149162855
LIC_RS07190 7605877359
LIC_RS07195 7756279565
LIC_RS07200 7959579867
LIC_RS07215 8251484223
LIC_RS07220 8422084699
LIC_RS07260 9826498857
LIC_RS07265 98876100147
LIC_RS10100 103537103851
LIC_RS10095 103885106035
LIC_RS10090 106053107183
LIC_RS10065 110995111570
LIC_RS09790 148776150302
LIC_RS07580 165205166149
LIC_RS07640 173463174221
LIC_RS07680 184099184290
LIC_RS07685 184332185051
LIC_RS08405 217846219024
LIC_RS08445 223737224381
LIC_RS08460 225827227368
398950IlluminaNZ_NPDZ01000006.1249139Leptospira perolatii strain FH1-B-B1 contig_6, whole genome shotgun sequenceLIC_RS03110 39834399 EMBL GBK
LIC_RS03035 2798930736
LIC_RS02250 5659557161
BACT000020 (rpsT) 8109681368
LIC_RS02325 8148882879
LIC_RS01375 9043991080
LIC_RS01380 9108092132
LIC_RS01395 9421496337
LIC_RS03235 114616114954
LIC_RS02455 166779168050
LIC_RS02460 168054170702
LIC_RS14760 197994199199
BACT000010 (rpsJ) 199210199518
BACT000032 (rplC) 199530200150
BACT000033 (rplD) 200166200804
BACT000052 (rplW) 200801201109
BACT000031 (rplB) 201113201952
LIC_RS14735 201113201952
BACT000019 (rpsS) 201963202244
BACT000051 (rplV) 202244202576
BACT000003 (rpsC) 202588203265
BACT000045 (rplP) 203297203710
BACT000058 (rpmC) 203707204009
BACT000017 (rpsQ) 204012204281
BACT000043 (rplN) 204283204675
BACT000053 (rplX) 204677205030
BACT000034 (rplE) 205034205582
BACT000014 (rpsN) 205599205784
BACT000008 (rpsH) 205798206196
BACT000035 (rplF) 206227206766
BACT000047 (rplR) 206773207141
BACT000005 (rpsE) 207145207654
BACT000059 (rpmD) 207666207845
BACT000044 (rplO) 207861208385
BACT000065 (rpmJ) 210701210814
BACT000013 (rpsM) 210817211194
BACT000011 (rpsK) 211197211604
BACT000004 (rpsD) 211610212233
LIC_RS14615 212258213235
BACT000046 (rplQ) 213237213863
LIC_RS13145 236544237818
LIC_RS03505 245783246652
LIC_RS03510 246628246876
LIC_RS03515 246873247532
398936IlluminaNZ_NPDZ01000007.1220055Leptospira perolatii strain FH1-B-B1 contig_7, whole genome shotgun sequenceBACT000015 (rpsO) 35153781 EMBL GBK
LIC_RS13855 37935880
LIC_RS13025 1160512741
LIC_RS13020 1275014075
LIC_RS13015 1407214806
LIC_RS13010 1479615806
LIC_RS12995 1699018942
LIC_RS12300 4512946550
LIC_RS05530 5926960438
BACT000006 (rpsF) 176056176331
LIC_RS10785 176324176767
BACT000018 (rpsR) 176783177097
BACT000038 (rplI) 177109177573
LIC_RS10770 177591178913
LIC_RS10765 178948180753
LIC_RS10710 202136203128
LIC_RS10705 203132204247
LIC_RS10670 207422208429
398946IlluminaNZ_NPDZ01000008.1174179Leptospira perolatii strain FH1-B-B1 contig_8, whole genome shotgun sequenceLIC_RS17750 49176827 EMBL GBK
LIC_RS17745 68608128
LIC_RS17740 82348683
LIC_RS17735 86848944
LIC_RS17510 2621128178
BACT000063 (rpmH) 5134751508
LIC_RS00810 5393454644
LIC_RS00815 5465256028
LIC_RS01005 6197062908
LIC_RS16895 7376174738
LIC_RS16830 8855589706
LIC_RS16785 9495196120
LIC_RS16780 9616197627
LIC_RS01610 167703168095
398976IlluminaNZ_NPDZ01000009.1157362Leptospira perolatii strain FH1-B-B1 contig_9, whole genome shotgun sequenceLIC_RS09535 3848039355 EMBL GBK
LIC_RS14070 8342783987
LIC_RS14080 8451885732
LIC_RS14085 8573286211
LIC_RS14120 9326994750
BACT000042 (rplM) 99606100055
BACT000009 (rpsI) 100070100468
398979IlluminaNZ_NPDZ01000010.1132948Leptospira perolatii strain FH1-B-B1 contig_10, whole genome shotgun sequenceLIC_RS13755 1116811929 EMBL GBK
LIC_RS04600 2081521234
LIC_RS13190 4903549919
LIC_RS13185 4995051122
LIC_RS13500 6217463583
BACT000060 (rpmE) 6360563805
LIC_RS14520 8503986328
LIC_RS14490 9011290885
LIC_RS14485 9209092530
LIC_RS04340 9828599169
LIC_RS04345 9918099989
LIC_RS04360 101873102253
LIC_RS04370 102490102873
BACT000002 (rpsB) 103164104081
LIC_RS04385 104093104692
LIC_RS04395 105435105992
LIC_RS04400 105994106719
LIC_RS04405 106712107626
LIC_RS04410 107634108803
LIC_RS04425 112259113473
LIC_RS04430 113470114285
LIC_RS04440 114418116748
LIC_RS04450 118725119195
LIC_RS15535 120999121685
LIC_RS15540 121771124305
398941IlluminaNZ_NPDZ01000011.1128821Leptospira perolatii strain FH1-B-B1 contig_11, whole genome shotgun sequenceLIC_RS09205 85499322 EMBL GBK
LIC_RS09135 2275024444
LIC_RS09105 3001730661
LIC_RS09090 3229533275
LIC_RS09065 3767937852
LIC_RS09030 4350943916
LIC_RS09025 4394845024
BACT000057 (rpmB) 5157851859
LIC_RS08940 6330364598
LIC_RS08935 6464865706
398965IlluminaNZ_NPDZ01000012.1100254Leptospira perolatii strain FH1-B-B1 contig_12, whole genome shotgun sequenceLIC_RS04145 5990760950 EMBL GBK
LIC_RS02120 9752999604
398967IlluminaNZ_NPDZ01000013.168488Leptospira perolatii strain FH1-B-B1 contig_13, whole genome shotgun sequenceLIC_RS09280 54266427 EMBL GBK
LIC_RS09290 71048501
LIC_RS09305 1092411511
LIC_RS09365 2030621331
LIC_RS09400 2639427320
LIC_RS09405 2733128263
LIC_RS09420 3040331227
LIC_RS09460 3752738927
LIC_RS09465 3892439703
LIC_RS09470 3971640483
LIC_RS09475 4056641315
LIC_RS09600 4678448046
LIC_RS09675 6368164655
398974IlluminaNZ_NPDZ01000014.167301Leptospira perolatii strain FH1-B-B1 contig_14, whole genome shotgun sequenceBACT000021 (rpsU) 1003210241 EMBL GBK
LIC_RS08685 1028510734
LIC_RS08675 1254614309
LIC_RS08660 1613817355
LIC_RS07745 2195322489
LIC_RS07760 2336723675
LIC_RS07855 3894839799
LIC_RS07900 4711347967
LIC_RS07915 5001150736
LIC_RS07920 5073352163
LIC_RS07925 5216853130
LIC_RS07930 5310553371
LIC_RS07935 5336855161
LIC_RS07940 5516856511
BACT000016 (rpsP) 6205762323
LIC_RS07985 6305763725
BACT000048 (rplS) 6372264144
398963IlluminaNZ_NPDZ01000015.165029Leptospira perolatii strain FH1-B-B1 contig_15, whole genome shotgun sequenceLIC_RS06510 3620236429 EMBL GBK
LIC_RS06490 3882740773
LIC_RS06475 4247443496
LIC_RS12660 5314354558
398955IlluminaNZ_NPDZ01000016.164871Leptospira perolatii strain FH1-B-B1 contig_16, whole genome shotgun sequenceLIC_RS13420 3939739807 EMBL GBK
LIC_RS13425 3992341044
LIC_RS13470 4515145999
398937IlluminaNZ_NPDZ01000017.142420Leptospira perolatii strain FH1-B-B1 contig_17, whole genome shotgun sequenceLIC_RS08050 65628238 EMBL GBK
LIC_RS08055 82529478
LIC_RS08175 2722128771
LIC_RS08210 3228533118
LIC_RS08225 3432835374
LIC_RS08230 3541536104
398970IlluminaNZ_NPDZ01000018.137053Leptospira perolatii strain FH1-B-B1 contig_18, whole genome shotgun sequenceLIC_RS02030 1041112351 EMBL GBK
LIC_RS02025 1246712634
398940IlluminaNZ_NPDZ01000019.136734Leptospira perolatii strain FH1-B-B1 contig_19, whole genome shotgun sequenceLIC_RS03275 3278134022 EMBL GBK
398961IlluminaNZ_NPDZ01000020.129144Leptospira perolatii strain FH1-B-B1 contig_20, whole genome shotgun sequenceLIC_RS04520 1323916304 EMBL GBK
LIC_RS04525 1632517698
LIC_RS04530 1769818249
LIC_RS04540 1884820077
398945 Illumina NZ_NPDZ01000021.1 28781 Leptospira perolatii strain FH1-B-B1 contig_21, whole genome shotgun sequence
398953IlluminaNZ_NPDZ01000022.118560Leptospira perolatii strain FH1-B-B1 contig_22, whole genome shotgun sequenceLIC_RS16285 1183512689 EMBL GBK
LIC_RS16230 1570816487
398983 Illumina NZ_NPDZ01000023.1 17278 Leptospira perolatii strain FH1-B-B1 contig_23, whole genome shotgun sequence
398959IlluminaNZ_NPDZ01000024.113637Leptospira perolatii strain FH1-B-B1 contig_24, whole genome shotgun sequenceLIC_RS13980 81358929 EMBL GBK
LIC_RS13970 982411101
398968 Illumina NZ_NPDZ01000025.1 10318 Leptospira perolatii strain FH1-B-B1 contig_25, whole genome shotgun sequence
398964 Illumina NZ_NPDZ01000026.1 9013 Leptospira perolatii strain FH1-B-B1 contig_26, whole genome shotgun sequence
398980 Illumina NZ_NPDZ01000027.1 8262 Leptospira perolatii strain FH1-B-B1 contig_27, whole genome shotgun sequence
398957 Illumina NZ_NPDZ01000028.1 7342 Leptospira perolatii strain FH1-B-B1 contig_28, whole genome shotgun sequence
398956 Illumina NZ_NPDZ01000029.1 6888 Leptospira perolatii strain FH1-B-B1 contig_29, whole genome shotgun sequence
398975 Illumina NZ_NPDZ01000030.1 6557 Leptospira perolatii strain FH1-B-B1 contig_30, whole genome shotgun sequence
398969 Illumina NZ_NPDZ01000031.1 5141 Leptospira perolatii strain FH1-B-B1 contig_31, whole genome shotgun sequence
398939 Illumina NZ_NPDZ01000032.1 3217 Leptospira perolatii strain FH1-B-B1 contig_32, whole genome shotgun sequence
398971IlluminaNZ_NPDZ01000033.11943Leptospira perolatii strain FH1-B-B1 contig_33, whole genome shotgun sequence16S_perolatii 3111815 EMBL GBK
398954 Illumina NZ_NPDZ01000034.1 1902 Leptospira perolatii strain FH1-B-B1 contig_34, whole genome shotgun sequence
398947 Illumina NZ_NPDZ01000035.1 1902 Leptospira perolatii strain FH1-B-B1 contig_35, whole genome shotgun sequence
398982 Illumina NZ_NPDZ01000036.1 1784 Leptospira perolatii strain FH1-B-B1 contig_36, whole genome shotgun sequence
398944 Illumina NZ_NPDZ01000037.1 1703 Leptospira perolatii strain FH1-B-B1 contig_37, whole genome shotgun sequence
398981 Illumina NZ_NPDZ01000038.1 1099 Leptospira perolatii strain FH1-B-B1 contig_38, whole genome shotgun sequence
398972 Illumina NZ_NPDZ01000039.1 1036 Leptospira perolatii strain FH1-B-B1 contig_39, whole genome shotgun sequence
398943 Illumina NZ_NPDZ01000040.1 964 Leptospira perolatii strain FH1-B-B1 contig_40, whole genome shotgun sequence
398951 Illumina NZ_NPDZ01000041.1 736 Leptospira perolatii strain FH1-B-B1 contig_41, whole genome shotgun sequence
398952 Illumina NZ_NPDZ01000042.1 727 Leptospira perolatii strain FH1-B-B1 contig_42, whole genome shotgun sequence
398949 Illumina NZ_NPDZ01000043.1 727 Leptospira perolatii strain FH1-B-B1 contig_43, whole genome shotgun sequence
398973 Illumina NZ_NPDZ01000044.1 683 Leptospira perolatii strain FH1-B-B1 contig_44, whole genome shotgun sequence
398978 Illumina NZ_NPDZ01000045.1 672 Leptospira perolatii strain FH1-B-B1 contig_45, whole genome shotgun sequence
398960 Illumina NZ_NPDZ01000046.1 599 Leptospira perolatii strain FH1-B-B1 contig_46, whole genome shotgun sequence
398935 Illumina NZ_NPDZ01000047.1 561 Leptospira perolatii strain FH1-B-B1 contig_47, whole genome shotgun sequence
398958 Illumina NZ_NPDZ01000048.1 530 Leptospira perolatii strain FH1-B-B1 contig_48, whole genome shotgun sequence
398938 Illumina NZ_NPDZ01000049.1 530 Leptospira perolatii strain FH1-B-B1 contig_49, whole genome shotgun sequence