Sequence bin for TC112

Contig summary statistics

Contigs
2
Total length
3,902,946
Minimum length
317,347
Maximum length
3,585,599
Mean length
1,951,473
N50
3,585,599
L50
1
N90
3,585,599
L90
1
N95
317,347
L95
2

FASTAEMBLGBKGFF3

SequenceSequencing methodOriginal designationLengthCommentsLocusStartEndDirectionAnnotation
292049otherCP084036.13585599Leptospira borgpetersenii strain TC112 chromosome I, complete sequenceLIC_RS00025 51897114 EMBL GBK
LIC_RS00030 71339631
LIC_RS00035 962810584
LIC_RS00585 3640537130
LIC_RS00580 3712737759
LIC_RS00575 3775638376
LIC_RS00525 4528746351
LIC_RS17860 6834769876
LIC_RS17865 6988170228
LIC_RS17870 7017670814
LIC_RS17875 7081772391
LIC_RS17880 7239573237
LIC_RS00160 8554687661
LIC_RS00150 8900189849
LIC_RS17790 9846098789
LIC_RS17750 105094107004
LIC_RS17745 107041108309
LIC_RS17740 108511108963
LIC_RS17735 108964109218
LIC_RS17510 141663143627
LIC_RS17445 175248175484
LIC_RS17420 179883180845
LIC_RS17415 180862181851
LIC_RS17410 181848182891
LIC_RS17405 182888183898
LIC_RS16975 187779189089
LIC_RS16980 189111190376
LIC_RS17045 195446196843
LIC_RS17065 200605201333
LIC_RS17070 201340202269
LIC_RS17110 208238208720
LIC_RS17115 208730209143
LIC_RS02025 241358241528
LIC_RS02030 241592243535
LIC_RS02035 243650243985
LIC_RS03010 252053253951
LIC_RS17350 271570272307
LIC_RS17345 272304273221
LIC_RS17340 273221274471
LIC_RS17230 298084300219
LIC_RS17225 300216301604
LIC_RS17210 302720304285
LIC_RS17185 307077307727
LIC_RS17180 307724308452
LIC_RS01070 318927319796
LIC_RS01090 322051323052
LIC_RS01095 323062324666
LIC_RS01150 336008339538
LIC_RS01160 340335341234
LIC_RS01205 349192350565
LIC_RS01210 350567351241
LIC_RS01760 352348354891
LIC_RS01745 356124357455
LIC_RS01690 361128362264
LIC_RS01680 362556363521
LIC_RS01660 367238367432
LIC_RS01645 369591370028
LIC_RS01635 370769371896
LIC_RS01545 374159374542
LIC_RS01550 374545375006
LIC_RS01555 375072375503
LIC_RS01605 392208395108
LIC_RS01610 395139395531
LIC_RS01500 411751413151
LIC_RS01495 413156413440
LIC_RS13145 446718447995
LIC_RS13135 449404451320
LIC_RS02770 463200465089
LIC_RS02780 466620469046
LIC_RS14760 479213480418
BACT000010 (rpsJ) 480432480740
BACT000032 (rplC) 480753481373
BACT000033 (rplD) 481391482026
BACT000052 (rplW) 482023482337
BACT000031 (rplB) 482341483180
LIC_RS14735 482341483180
BACT000019 (rpsS) 483188483469
BACT000051 (rplV) 483469483801
BACT000003 (rpsC) 483814484491
BACT000045 (rplP) 484514484927
BACT000058 (rpmC) 484924485208
BACT000017 (rpsQ) 485218485487
BACT000043 (rplN) 485489485881
BACT000053 (rplX) 485881486234
BACT000034 (rplE) 486238486786
BACT000014 (rpsN) 486806486991
BACT000008 (rpsH) 487011487412
BACT000035 (rplF) 487439487978
BACT000047 (rplR) 487982488350
BACT000005 (rpsE) 488352488858
BACT000059 (rpmD) 488870489049
BACT000044 (rplO) 489065489607
secY 489623491005
secY_3 (secY_3) 490472490972
adk_3 (adk_3) 491085491513
adk_2 (adk_2) 491085491514
BACT000065 (rpmJ) 491806491919
BACT000013 (rpsM) 491923492300
BACT000011 (rpsK) 492303492713
BACT000004 (rpsD) 492725493348
LIC_RS14615 493371494348
BACT000046 (rplQ) 494350494847
LIC_RS04720 507038507997
LIC_RS02255 541030542988
LIC_RS02250 543144543707
LIC_RS02240 544409545347
glmU_1 (glmU_1) 545554545997
glmU_2 (glmU_2) 545554545997
LIC_RS03820 554388555479
LIC_RS02365 566221566928
LIC_RS03035 570845573610
LIC_RS02515 590102591445
LIC_RS02520 591542592273
LIC_RS15925 652410653162
LIC_RS14230 659075660325
BACT000056 (rpmA) 662665662919
BACT000050 (rplU) 663235663549
LIC_RS02110 672239672700
LIC_RS02115 672701673117
LIC_RS02120 673110675176
LIC_RS04145 685365686405
LIC_RS03270 714292714603
LIC_RS03275 714609715850
LIC_RS01850 723563724531
LIC_RS01855 724528726348
LIC_RS01860 726354726947
LIC_RS01865 727104728063
LIC_RS01870 728076728837
BACT000042 (rplM) 777296777748
BACT000009 (rpsI) 777759778157
LIC_RS03955 778245781067
LIC_RS03960 781064781555
LIC_RS03980 784579786153
LIC_RS03990 787735788562
LIC_RS03870 800329800874
BACT000040 (rplK) 800898801326
BACT000030 (rplA) 801341802033
BACT000039 (rplJ) 802061802594
BACT000036 (rplL) 802645803025
LIC_RS03900 806954811168
BACT000012 (rpsL) 811256811630
BACT000007 (rpsG) 811647812120
LIC_RS15120 823230825230
LIC_RS15130 825950826411
LIC_RS03700 839833841245
LIC_RS03705 841262843400
LIC_RS15220 844140845693
LIC_RS15215 845951846232
LIC_RS15200 848363848824
LIC_RS15195 848827849720
LIC_RS13265 879814881070
LIC_RS05300 893512893853
LIC_RS05355 906400907563
LIC_RS05360 907598908902
LIC_RS05845 915229916134
LIC_RS05850 916137916946
LIC_RS05855 916948917952
LIC_RS05875 921024922973
LIC_RS05880 923087923725
LIC_RS05885 923722925101
LIC_RS13210 926823927671
LIC_RS13195 929405930979
LIC_RS13190 931150932025
LIC_RS13185 932038933210
LIC_RS12250 940889942730
LIC_RS12210 948383948931
LIC_RS13170 997200998549
LIC_RS12770 10173701018143
LIC_RS04340 10243671025290
LIC_RS04345 10252931026102
LIC_RS04350 10261181026939
LIC_RS04360 10279941028368
LIC_RS04365 10283721028593
LIC_RS04370 10286021028979
LIC_RS04375 10290021029262
BACT000002 (rpsB) 10292661030150
LIC_RS04385 10301641030763
LIC_RS04395 10314971032051
LIC_RS04400 10320531032778
LIC_RS04405 10327711033685
LIC_RS04410 10336921034861
LIC_RS04415 10348551036582
LIC_RS04420 10365871038317
LIC_RS04425 10383201039522
LIC_RS04430 10395191040313
LIC_RS04440 10409981043310
LIC_RS04445 10433391045246
LIC_RS04450 10452881045758
LIC_RS18310 10536571054421
LIC_RS18315 10550531055286
LIC_RS18330 10568911057982
LIC_RS18335 10579821058863
LIC_RS05530 10588851060051
LIC_RS05535 10601301060453
LIC_RS05555 10628371064771
LIC_RS05725 11289011129815
LIC_RS05750 11353341136185
LIC_RS06005 11563331157076
LIC_RS06015 11583081158820
LIC_RS06140 11659351166927
LIC_RS06700 11839521184626
LIC_RS06705 11847221185984
LIC_RS05500 12081911209207
LIC_RS05505 12092611210730
LIC_RS11760 12191881219952
LIC_RS11765 12199491220965
LIC_RS11770 12209701222358
LIC_RS11780 12226771223288
LIC_RS06815 12493961249884
LIC_RS06825 12524711253358
LIC_RS06850 12618301263470
LIC_RS06855 12634841263774
LIC_RS07115 12766531277300
LIC_RS07125 12780291279393
LIC_RS07180 12933511295465
LIC_RS07190 12957001296992
LIC_RS07195 12971531299156
LIC_RS07200 12993021299571
LIC_RS07210 13029211304027
LIC_RS07215 13044811306190
LIC_RS07220 13061871306672
LIC_RS07240 13092221310961
LIC_RS07260 13131901313777
LIC_RS07265 13138001315062
LIC_RS11320 13326421334648
LIC_RS11310 13350081336024
BACT000006 (rpsF) 14344681434743
LIC_RS10785 14347361435185
BACT000018 (rpsR) 14351981435509
BACT000038 (rplI) 14355191435968
LIC_RS10770 14359841437312
LIC_RS10765 14373121439126
LIC_RS10755 14401131442533
LIC_RS10710 14543281455320
LIC_RS10705 14553201456453
tpiA_1 (tpiA_1) 14579651458390
LIC_RS10675 14587581459948
LIC_RS10670 14599521460959
LIC_RS10595 14751881475538
LIC_RS10590 14755501476083
LIC_RS09685 15106111511621
LIC_RS09675 15130711514045
LIC_RS09605 15261761527414
LIC_RS09600 15274841528746
LIC_RS09590 15293861530237
LIC_RS09475 15341761534925
LIC_RS09470 15349571535721
LIC_RS09465 15357251536504
LIC_RS09460 15365011538030
LIC_RS09450 15390011539618
LIC_RS09420 15442951545125
LIC_RS09415 15452621546560
LIC_RS09405 15486471549579
LIC_RS09400 15495811550528
LIC_RS09385 15515991553011
LIC_RS09380 15530081553883
LIC_RS09365 15555441556569
LIC_RS09350 15587301558996
LIC_RS09305 15663841566971
LIC_RS09290 15693821570779
LIC_RS09280 15714381572439
LIC_RS09250 15776941578020
LIC_RS09245 15780171580248
LIC_RS09230 15835491584580
LIC_RS09225 15845771584825
LIC_RS09215 15851391585366
LIC_RS09205 15857451586518
LIC_RS09200 15865151587432
LIC_RS09175 15912131592703
LIC_RS09150 15959671597388
LIC_RS09145 15974281598420
LIC_RS09135 15996951601404
LIC_RS09130 16014701602687
LIC_RS09105 16072541607901
LIC_RS09090 16095621610542
LIC_RS09070 16136971614761
LIC_RS09065 16151321615308
LIC_RS09030 16209111621318
LIC_RS09025 16213351622411
LIC_RS09020 16224291623649
BACT000057 (rpmB) 16287701629054
LIC_RS08940 16406321641942
LIC_RS08935 16438161644877
LIC_RS08930 16448741645476
rrs2_3 (rrs2_3) 16657051666154
LIC_RS07745 16746581675194
LIC_RS07760 16757351676044
LIC_RS07775 16792691680921
LIC_RS07780 16809271683674
LIC_RS07795 16838131684859
LIC_RS07805 16853531685865
LIC_RS07825 16913841691746
LIC_RS07855 17060111706862
LIC_RS07865 17071911707742
LIC_RS08145 17232781724546
LIC_RS08150 17245531725680
LIC_RS08175 17293951730945
LIC_RS08180 17309331731502
LIC_RS08190 17324561732998
LIC_RS08210 17363931737223
LIC_RS08220 17375421738420
LIC_RS08225 17384221739465
LIC_RS08230 17395101740199
LIC_RS08265 17460131747770
LIC_RS08270 17477851748759
LIC_RS08280 17492461750016
LIC_RS08300 17531391753744
LIC_RS08305 17537471754196
LIC_RS08345 17633401765385
LIC_RS08405 17752131776379
LIC_RS08445 17812101781860
LIC_RS08460 17837431785278
LIC_RS08465 17852821785908
LIC_RS08470 17862101786653
LIC_RS08500 17893751790520
LIC_RS08735 18308391832230
BACT000021 (rpsU) 18399381840147
LIC_RS08685 18402051840651
LIC_RS08675 18424821844239
LIC_RS08660 18484981849715
LIC_RS08760 18757911878697
LIC_RS08090 18857191886246
LIC_RS08060 18909261891402
LIC_RS08055 18914251892651
LIC_RS08050 18926561894329
LIC_RS08045 18943331896129
LIC_RS08040 18961351897040
BACT000048 (rplS) 19039741904384
LIC_RS07985 19043811905049
BACT000016 (rpsP) 19057921906058
LIC_RS07965 19062851906932
LIC_RS07940 19116481912988
LIC_RS07935 19129951914785
LIC_RS07930 19147991915062
LIC_RS07925 19150431915999
LIC_RS07920 19160031917424
LIC_RS07915 19174211918146
LIC_RS07900 19201151920978
LIC_RS07895 19209751922597
LIC_RS07890 19226991923175
LIC_RS07685 19273021928060
LIC_RS07680 19280671928261
LIC_RS07640 19380071938759
LIC_RS07580 19568181957714
LIC_RS10215 19788441979524
LIC_RS10220 19795431981456
LIC_RS10265 19848171986622
LIC_RS09785 20064102007192
LIC_RS09790 20071942008720
LIC_RS09905 20339102035307
LIC_RS09920 20364832039197
LIC_RS09925 20393222040074
LIC_RS09940 20414372041994
LIC_RS09945 20419962043018
LIC_RS09955 20434032043996
LIC_RS10065 20572422057814
LIC_RS10090 20619602063090
LIC_RS10095 20631062065265
LIC_RS10100 20652892065603
LIC_RS10315 21007712102747
LIC_RS07095 21042502104531
LIC_RS07080 21061402108125
LIC_RS07075 21081512108951
LIC_RS07060 21105252111826
LIC_RS07055 21118782113995
LIC_RS07045 21155342116313
LIC_RS07040 21163202116583
LIC_RS07035 21165802117368
LIC_RS07025 21182152119276
LIC_RS07020 21195082119843
LIC_RS06950 21381692139434
lipL32_2 (lipL32_2) 21401722140621
lipL32_3 (lipL32_3) 21401722140621
LIC_RS10345 21447122146019
LIC_RS10350 21461012146955
LIC_RS10355 21469712147936
LIC_RS10360 21479332149357
LIC_RS10365 21494472150103
LIC_RS07490 21560452156815
LIC_RS07485 21568122158269
LIC_RS07480 21582662158556
LIC_RS07475 21585842159999
LIC_RS07470 21600012162985
LIC_RS07455 21646222168152
LIC_RS07450 21681492169006
LIC_RS07445 21690122170376
LIC_RS11445 22050022205466
LIC_RS11460 22064362207497
LIC_RS11470 22083752208623
LIC_RS11495 22119092213726
LIC_RS11500 22137282215326
LIC_RS06555 22236222224725
LIC_RS06550 22248712225752
LIC_RS06535 22273672228659
LIC_RS06510 22480222248249
mreA_2 (mreA_2) 22505652250999
mreA_1 (mreA_1) 22505652250999
LIC_RS06490 22517932253739
LIC_RS06485 22537412254253
LIC_RS06480 22542502255359
LIC_RS06475 22554312256453
LIC_RS06470 22566442258212
LIC_RS06395 22705972272000
LIC_RS06390 22720262272886
LIC_RS06385 22729012274412
LIC_RS06375 22749672275488
LIC_RS06370 22754922275794
LIC_RS06340 22808532281662
LIC_RS12300 22881162289537
LIC_RS12325 22918142294606
LIC_RS12330 22946792296511
LIC_RS12375 23043522305464
LIC_RS06745 23189242320042
LIC_RS06740 23201892320656
LIC_RS11590 23641742366456
LIC_RS11595 23664732367609
LIC_RS11625 23717892372457
x_2 23977312399041
LIC_RS13855 24071122409202
BACT000015 (rpsO) 24091992409465
LIC_RS13880 24134322414820
LIC_RS12485 24194912420498
BACT000061 (rpmF) 24205042420704
LIC_RS12500 24209782421595
BACT000001 (rpsA) 24223642424046
LIC_RS12530 24270012428092
LIC_RS12540 24286152429400
LIC_RS12545 24294172429779
LIC_RS12550 24297812430848
LIC_RS12555 24308542434090
LIC_RS12560 24340902434587
BACT000049 (rplT) 24367432437096
BACT000064 (rpmI) 24370962437299
sucA_1 (sucA_1) 24477322448178
LIC_RS12660 24489182450321
LIC_RS12665 24503352451576
LIC_RS12675 24541142455070
LIC_RS12680 24551772455995
LIC_RS11785 24594692460647
LIC_RS12935 24778562478926
LIC_RS12945 24797652480601
LIC_RS12980 24847182485314
LIC_RS12990 24865972487535
LIC_RS12995 24875382489466
LIC_RS13010 24906402491650
LIC_RS13015 24916252492371
LIC_RS13020 24923682493687
LIC_RS13025 24936932494811
LIC_RS11805 25096812511342
LIC_RS11815 25118842512549
LIC_RS11825 25134392513789
LIC_RS13970 25600212561307
LIC_RS13975 25618332562360
LIC_RS13980 25623602563160
pfkB_1 (pfkB_1) 25858992586330
16S_borgpetersenii 25926282594132
rrs2_3 (rrs2_3) 25935852594034
LIC_RS05230 26035122605314
LIC_RS05225 26053282607352
LIC_RS05180 26109172611252
LIC_RS05185 26113222612446
LIC_RS05190 26124432612925
LIC_RS15540 26354922638017
LIC_RS15535 26514732652159
LIC_RS04540 26568092658032
LIC_RS04530 26587412659292
LIC_RS04525 26592922660665
LIC_RS04520 26606852663762
LIC_RS14300 26751142675872
LIC_RS14305 26758802676212
LIC_RS06115 26783302680312
LIC_RS06110 26804742681868
LIC_RS14425 27072652708182
LIC_RS14430 27081572709182
LIC_RS14485 27154072715847
LIC_RS14490 27159612716728
LIC_RS14520 27219792723268
LIC_RS14530 27247722725716
x_1 27443102746301
LIC_RS14570 27498502750776
LIC_RS13500 27559072757352
BACT000060 (rpmE) 27573732757576
LIC_RS13510 27576332758424
LIC_RS13515 27596622759850
LIC_RS04605 27709652771384
LIC_RS04600 27713872771806
LIC_RS04070 27817842784567
LIC_RS04065 27847842785734
LIC_RS04060 27857582786477
LIC_RS03515 27894292790088
LIC_RS03510 27900852790333
LIC_RS03505 27903092791169
LIC_RS03500 27911662792296
LIC_RS13760 28106322811567
LIC_RS13755 28115642812325
LIC_RS15510 28628182863834
LIC_RS15980 29032322904569
caiB_1 (caiB_1) 29460192946420
LIC_RS02460 29865572989220
LIC_RS02455 29892102990490
LIC_RS14120 30112703012748
LIC_RS14115 30127453014442
LIC_RS14110 30144443016390
LIC_RS14095 30174153018455
LIC_RS14090 30184523019786
LIC_RS14085 30198023020281
LIC_RS14080 30202813021498
LIC_RS14075 30215003022033
LIC_RS14070 30220303022590
LIC_RS09545 30367483037497
LIC_RS09535 30379633038835
LIC_RS02715 30992543099802
LIC_RS02720 30998263100794
LIC_RS02725 31010943102209
LIC_RS02730 31026573104594
LIC_RS02740 31052963106324
LIC_RS16350 31204143120701
LIC_RS16320 31242753125645
LIC_RS16230 31294053130184
LIC_RS16225 31301813131152
LIC_RS16195 31404283141429
LIC_RS16175 31461713147505
LIC_RS16170 31475193148067
LIC_RS01435 31576113158375
LIC_RS01395 31622463164366
LIC_RS01380 31664213167479
LIC_RS01375 31674793168144
LIC_RS02310 31743023175909
LIC_RS02315 31759263176972
LIC_RS02325 31788153180197
BACT000020 (rpsT) 31803263180598
LIC_RS02350 31822483183045
LIC_RS16285 32011403201997
LIC_RS03235 32082983208636
LIC_RS03230 32091653209905
LIC_RS03225 32099053210429
LIC_RS03220 32104713211298
LIC_RS03215 32113143212096
LIC_RS03210 32121033212327
LIC_RS15250 32241003225074
lipL41_3 (lipL41_3) 32258143226305
lipL41_2 (lipL41_2) 32258143226306
LIC_RS15275 32275233228728
LIC_RS15280 32287543229983
LIC_RS13470 32739343274782
LIC_RS13425 32802363281354
LIC_RS13420 32814063281816
LIC_RS13405 32855553286823
lfb1 32918693292155
LIC_RS03110 33411773341593
LIC_RS16505 33518513352504
LIC_RS16515 33528863354219
LIC_RS16565 33605993363007
LIC_RS16570 33630813365936
icdA_2 (icdA_2) 33911323391688
icdA_3 (icdA_3) 33911343391688
LIC_RS16780 34073153408787
LIC_RS16785 34088283409994
LIC_RS16800 34111933411585
LIC_RS16825 34139273415318
LIC_RS16830 34153823416539
LIC_RS16895 34276443428615
LIC_RS01005 34417893442772
LIC_RS00815 34543043455674
LIC_RS00810 34556673456377
BACT000063 (rpmH) 34588403459001
LIC_RS00725 34677293469186
LIC_RS00625 34931103494066
LIC_RS00655 35028173503755
LIC_RS00095 35061533506895
LIC_RS17890 35109643512217
LIC_RS17895 35122103513019
LIC_RS17900 35131403514159
LIC_RS17905 35141603514507
LIC_RS17930 35187073519582
LIC_RS17935 35195853520346
LIC_RS00205 35241233525091
pntA_1 (pntA_1) 35317663532290
pntA_2 (pntA_2) 35317663532290
LIC_RS00245 35331423534461
LIC_RS00260 35377753538617
LIC_RS00335 35603013560822
LIC_RS00340 35608233561605
LIC_RS00355 35628463563214
LIC_RS00380 35678823568727
LIC_RS00385 35687343569438
LIC_RS17965 35813653583272
LIC_RS17970 35834133584336
361033Illumina + ONT hybridgi|2572272986|ref|NZ_CP084037.1|317347Leptospira borgpetersenii strain TC112 chromosome II, complete sequenceLIC_RS19435 7371582 EMBL GBK
LIC_RS18020 1137312326
LIC_RS18025 1232313648
LIC_RS18040 1523716259
LIC_RS18045 1625617605
LIC_RS18075 2247023387
LIC_RS18080 2338024087
LIC_RS18115 3305034318
LIC_RS18170 4524546234
LIC_RS18185 4793348871
LIC_RS18205 5223754048
LIC_RS18410 117649118959
LIC_RS18435 124866126200
LIC_RS18440 126315128063
LIC_RS18445 128227129138
LIC_RS18490 139517140056
LIC_RS18495 140053140904
LIC_RS18505 141592142818
LIC_RS19065 160168161220
LIC_RS19060 161228163426
BACT000062 (rpmG) 178642178806
LIC_RS18835 188095189510
LIC_RS18710 215390216277
LIC_RS18705 216509218119
LIC_RS18700 218116218598
LIC_RS18695 218591220483
LIC_RS18565 251593252144
LIC_RS19220 277029277871
LIC_RS19290 293833294780
LIC_RS19305 295811296536
LIC_RS19340 298290298568
LIC_RS19375 302123303577
LIC_RS19385 305587306636
LIC_RS19420 314727315737