Sequence bin for Brem 307

Contig summary statistics

Contigs
23
Total length
3,802,241
Minimum length
345
Maximum length
1,155,771
Mean length
165,315
N50
276,575
L50
4
N90
147,576
L90
11
N95
112,461
L95
13

FASTAEMBLGBKGFF3

SequenceSequencing methodOriginal designationLengthCommentsLocusStartEndDirectionAnnotation
31117accn|AHMR01000012 Leptospira borgpetersenii str. Brem 307 ctg1130121824003, whole genome shotgun sequence. [Leptospira borgpetersenii str. Brem 307 | 1049786.3]1155771LIC_RS04145 72428282 EMBL GBK
LIC_RS02120 2165123717
LIC_RS02115 2371024126
LIC_RS02110 2412724588
BACT000050 (rplU) 3310733421
BACT000056 (rpmA) 3373733991
LIC_RS14230 3634337593
LIC_RS15925 4346844220
LIC_RS02520 103461104186
LIC_RS02515 104283105626
LIC_RS03035 122873125638
LIC_RS02365 127909128688
LIC_RS03820 138930140021
glmU_1 (glmU_1) 147953148396
glmU_2 (glmU_2) 147953148396
LIC_RS02240 148603149541
LIC_RS02250 150243150806
LIC_RS04720 184626185585
BACT000046 (rplQ) 194662195159
LIC_RS14615 195161196138
BACT000004 (rpsD) 196161196784
BACT000011 (rpsK) 196796197206
BACT000013 (rpsM) 197209197586
BACT000065 (rpmJ) 197590197703
adk_2 (adk_2) 197995198424
adk_3 (adk_3) 197996198424
secY 198503199884
secY_3 (secY_3) 198536199036
BACT000044 (rplO) 199900200442
BACT000059 (rpmD) 200459200638
BACT000005 (rpsE) 200650201156
BACT000047 (rplR) 201158201526
BACT000035 (rplF) 201530202069
BACT000008 (rpsH) 202096202497
BACT000014 (rpsN) 202517202702
BACT000034 (rplE) 202722203270
BACT000043 (rplN) 203626204018
BACT000017 (rpsQ) 204020204289
BACT000045 (rplP) 204579204992
BACT000003 (rpsC) 205015205692
BACT000051 (rplV) 205705206037
BACT000031 (rplB) 206325207164
LIC_RS14735 206325207164
BACT000052 (rplW) 207168207482
BACT000033 (rplD) 207479208114
BACT000032 (rplC) 208132208752
BACT000010 (rpsJ) 208765209073
LIC_RS14760 209087210292
LIC_RS02770 225298227187
LIC_RS02780 228718231144
LIC_RS13145 239299240576
LIC_RS16285 254450255307
LIC_RS03230 263347264087
LIC_RS03225 264087264611
LIC_RS03220 264653265480
LIC_RS03215 265496266278
LIC_RS03210 266285266509
LIC_RS15250 278305279279
lipL41_2 (lipL41_2) 280019280511
lipL41_3 (lipL41_3) 280019280510
LIC_RS15275 281562282767
LIC_RS15280 282793284022
LIC_RS13425 294846295964
LIC_RS13420 296016296426
LIC_RS13405 300165301433
lfb1 306474306760
LIC_RS03110 360103360519
LIC_RS16505 371177371830
LIC_RS16515 372212373549
LIC_RS16565 380276382684
icdA_2 (icdA_2) 411813412369
icdA_3 (icdA_3) 411815412369
LIC_RS16780 427784429256
LIC_RS16800 431660432052
LIC_RS16830 435847437004
LIC_RS16895 448107449078
LIC_RS01005 462835463821
LIC_RS00815 474005475375
LIC_RS00810 475368476078
BACT000063 (rpmH) 478541478702
LIC_RS00725 487348488805
LIC_RS00655 507089508027
LIC_RS00625 516780517736
LIC_RS00525 534166535230
LIC_RS00575 543157543777
LIC_RS00580 543774544436
LIC_RS00585 544402545127
LIC_RS00385 566427567131
LIC_RS00380 567138567983
LIC_RS00355 572650573018
LIC_RS00340 574260575042
LIC_RS00335 575043575564
LIC_RS00260 595520596362
LIC_RS00245 599679600926
pntA_2 (pntA_2) 601849602373
pntA_1 (pntA_1) 601849602373
LIC_RS00205 608428609396
LIC_RS00150 621742622590
LIC_RS00095 632929633672
LIC_RS00035 641261642217
LIC_RS00030 642214644712
LIC_RS00025 644731646656
LIC_RS17970 652812653735
LIC_RS17935 662763663524
LIC_RS17930 663527664402
LIC_RS17905 665769666116
LIC_RS17895 667257668066
LIC_RS17890 668059669312
LIC_RS17880 671381672223
LIC_RS17870 673804674442
LIC_RS17865 674390674737
LIC_RS17790 685885686214
LIC_RS17750 692993694903
LIC_RS17745 694940696208
LIC_RS17740 696423696875
LIC_RS17735 696876697130
LIC_RS17510 728420730384
LIC_RS17445 761988762224
LIC_RS17420 766621767583
LIC_RS17415 767600768589
LIC_RS17410 768586769629
LIC_RS17405 769626770636
LIC_RS16975 775382776692
LIC_RS17045 782335783732
LIC_RS17070 788226789155
LIC_RS17110 795113795595
LIC_RS17115 795605796018
LIC_RS02025 828434828604
LIC_RS02035 830725831060
LIC_RS03010 840604842502
LIC_RS17350 860161860898
LIC_RS17345 860895861812
LIC_RS17340 861812863062
LIC_RS17230 888052890187
LIC_RS17225 890184891572
LIC_RS17185 897037897687
LIC_RS17180 897684898412
LIC_RS01070 909494910363
LIC_RS01090 912616913617
LIC_RS01095 913627915231
LIC_RS01150 927019930549
LIC_RS01160 931049931948
LIC_RS01205 939910941283
LIC_RS01210 941285941959
LIC_RS01760 943065945608
LIC_RS01745 946841948157
LIC_RS01690 957760958896
LIC_RS01680 960048961022
LIC_RS01660 964736964930
LIC_RS01645 967088967525
LIC_RS01635 968265969392
LIC_RS01545 971431971814
LIC_RS01550 971817972278
LIC_RS01555 972344972775
LIC_RS01605 991384994284
LIC_RS01610 994315994707
LIC_RS01495 10208811021165
LIC_RS01500 10211701022570
LIC_RS02350 10344681035265
BACT000020 (rpsT) 10369181037190
LIC_RS02325 10373191038701
LIC_RS02315 10405441041590
LIC_RS02310 10416071043217
LIC_RS01375 10484601049125
LIC_RS01380 10491251050183
LIC_RS01395 10522371054357
LIC_RS01435 10582281058992
LIC_RS16170 10661491066697
LIC_RS16175 10667111068045
LIC_RS16195 10727871073788
LIC_RS16225 10830971084068
LIC_RS16230 10840651084844
LIC_RS16320 10885951089965
LIC_RS16350 10935351093822
LIC_RS02740 11047071105735
LIC_RS02730 11064371108374
LIC_RS02725 11088231109938
LIC_RS02720 11102391111207
LIC_RS02715 11112311111779
31123accn|AHMR01000010 Leptospira borgpetersenii str. Brem 307 ctg1130121824001, whole genome shotgun sequence. [Leptospira borgpetersenii str. Brem 307 | 1049786.3]296148LIC_RS19340 28993177 EMBL GBK
LIC_RS19305 50785803
LIC_RS19290 68347781
LIC_RS18435 5237753711
LIC_RS18440 5378455532
LIC_RS18445 5569656607
LIC_RS18490 6528065819
LIC_RS18505 6735668582
LIC_RS19065 8618687238
LIC_RS19060 8724689444
BACT000062 (rpmG) 9857198735
LIC_RS18710 140118141005
LIC_RS18695 143317145209
LIC_RS19220 199225200067
LIC_RS18185 234615235553
LIC_RS18170 237250238239
LIC_RS18115 246899248167
LIC_RS18080 254552255259
LIC_RS18075 255252256169
LIC_RS18045 261025262374
LIC_RS18040 262371263393
LIC_RS18020 266303267256
LIC_RS19435 277041277886
LIC_RS19420 280235281245
LIC_RS19375 292737294191
31131accn|AHMR01000008 Leptospira borgpetersenii str. Brem 307 ctg1130121823999, whole genome shotgun sequence. [Leptospira borgpetersenii str. Brem 307 | 1049786.3]288413LIC_RS08500 24823627 EMBL GBK
LIC_RS08470 63186791
LIC_RS08465 70927718
LIC_RS08460 77229257
LIC_RS08445 1084411494
LIC_RS08405 1632017486
LIC_RS08305 4199142440
LIC_RS08300 4244343048
LIC_RS08280 4616846938
LIC_RS08270 4742548399
LIC_RS08265 4841450171
LIC_RS08230 5598756676
LIC_RS08225 5672357766
LIC_RS08220 5776858646
LIC_RS08210 5896559795
LIC_RS08190 6318263724
LIC_RS08175 6523466784
LIC_RS08150 7049671632
LIC_RS08060 8869389169
LIC_RS08055 8919290418
LIC_RS08050 9042392096
LIC_RS08045 9210093896
LIC_RS08040 9390194806
BACT000048 (rplS) 101739102149
LIC_RS07985 102146102814
BACT000016 (rpsP) 103557103823
LIC_RS07965 104053104697
LIC_RS07940 109413110753
LIC_RS07930 112563112826
LIC_RS07925 112807113763
LIC_RS07915 115183115908
LIC_RS07900 117874118737
LIC_RS07895 118734120356
LIC_RS07890 120458120934
LIC_RS07685 125928126686
LIC_RS07680 126693126887
LIC_RS07580 154144155040
LIC_RS09365 172599173624
LIC_RS09380 175284176159
LIC_RS09400 178637179584
LIC_RS09420 184033184863
LIC_RS09450 189534190151
LIC_RS09465 192646193425
LIC_RS09470 193429194193
LIC_RS09475 194225194974
LIC_RS09590 198912199763
LIC_RS09600 200402201664
LIC_RS09675 216209217183
LIC_RS09685 218627219637
LIC_RS09785 241146241928
LIC_RS09790 241930243456
LIC_RS09920 272927275641
LIC_RS09925 275756276508
LIC_RS09945 278440279462
LIC_RS09955 279847280440
31133accn|AHMR01000014 Leptospira borgpetersenii str. Brem 307 ctg1130121824005, whole genome shotgun sequence. [Leptospira borgpetersenii str. Brem 307 | 1049786.3]276575LIC_RS13755 993910700 EMBL GBK
LIC_RS03500 3100132131
LIC_RS03505 3212832988
LIC_RS03510 3296433212
LIC_RS03515 3320933868
LIC_RS04060 3681037529
LIC_RS04065 3755338503
LIC_RS04070 3872041503
LIC_RS04600 5261753036
LIC_RS04605 5303953458
LIC_RS13515 6454864736
LIC_RS13510 6597066761
BACT000060 (rpmE) 6681867021
LIC_RS13500 6704268487
LIC_RS14570 7214773073
x_1 7501277003
LIC_RS14530 101884102816
LIC_RS14520 104319105608
LIC_RS14490 111978112745
LIC_RS14485 112859113299
LIC_RS14430 119308120333
LIC_RS14425 120308121225
LIC_RS06110 143817145211
LIC_RS14305 149481149813
LIC_RS14300 149821150579
LIC_RS04525 178072179445
LIC_RS04530 179445179996
LIC_RS04540 180705181928
LIC_RS15535 186652187338
LIC_RS15540 202803205328
LIC_RS05190 236068236550
LIC_RS05185 236547237671
LIC_RS05180 237741238076
LIC_RS05225 241642243666
31128accn|AHMR01000013 Leptospira borgpetersenii str. Brem 307 ctg1130121824004, whole genome shotgun sequence. [Leptospira borgpetersenii str. Brem 307 | 1049786.3]237760LIC_RS09535 1570116573 EMBL GBK
LIC_RS09545 1703917788
LIC_RS14070 3254133101
LIC_RS14075 3309833631
LIC_RS14080 3363334850
LIC_RS14085 3485035329
LIC_RS14090 3534536679
LIC_RS14095 3667637716
LIC_RS14110 3874140687
LIC_RS14115 4068942386
LIC_RS14120 4238343861
caiB_1 (caiB_1) 109359109760
LIC_RS15980 144933146270
LIC_RS15510 194124195140
31113accn|AHMR01000018 Leptospira borgpetersenii str. Brem 307 ctg1130121824009, whole genome shotgun sequence. [Leptospira borgpetersenii str. Brem 307 | 1049786.3]228299LIC_RS11785 76638841 EMBL GBK
LIC_RS12680 1231413132
LIC_RS12675 1323914195
LIC_RS12665 1673317971
LIC_RS12660 1798519388
sucA_1 (sucA_1) 2012720573
BACT000064 (rpmI) 2953329736
BACT000049 (rplT) 2973630089
LIC_RS12560 3221332710
LIC_RS12545 3697737339
LIC_RS12540 3735638141
LIC_RS12530 3866439755
BACT000001 (rpsA) 4270644388
LIC_RS12500 4515745774
BACT000061 (rpmF) 4604846248
LIC_RS12485 4625447261
LIC_RS13880 5216353551
BACT000015 (rpsO) 5754157807
LIC_RS13855 5780459894
x_2 6777569085
LIC_RS11595 9867499810
LIC_RS11590 99827102109
LIC_RS06740 144964145431
LIC_RS06745 145578146696
LIC_RS12375 160783161895
LIC_RS12325 172765175557
LIC_RS12300 177831179252
LIC_RS05500 187230188246
LIC_RS05505 188300189769
LIC_RS11780 193580194191
LIC_RS11765 195902196918
LIC_RS11760 196915197679
LIC_RS06370 214229214531
LIC_RS06375 214535215056
LIC_RS06390 217135217995
LIC_RS06395 218021219424
31125accn|AHMR01000009 Leptospira borgpetersenii str. Brem 307 ctg1130121824000, whole genome shotgun sequence. [Leptospira borgpetersenii str. Brem 307 | 1049786.3]220747LIC_RS10065 28493421 EMBL GBK
LIC_RS10090 73138443
LIC_RS10100 1064010954
LIC_RS07095 5050350784
LIC_RS07080 5239354378
LIC_RS07075 5440455204
LIC_RS07060 5677758078
LIC_RS07055 5813060247
LIC_RS07045 6178962568
LIC_RS07040 6257562838
LIC_RS07035 6283563623
LIC_RS07025 6446965530
LIC_RS07020 6576266097
LIC_RS06950 8395685221
lipL32_2 (lipL32_2) 8595886407
lipL32_3 (lipL32_3) 8595886407
LIC_RS10345 9041291719
LIC_RS10350 9180192655
LIC_RS10355 9267193636
LIC_RS10360 9363395057
LIC_RS10365 9514795803
LIC_RS07490 99936100706
LIC_RS07485 100703102160
LIC_RS07480 102157102447
LIC_RS07450 112035112892
LIC_RS07445 112898114262
LIC_RS07265 149161150423
LIC_RS07260 150440151033
LIC_RS07220 157287157772
LIC_RS07210 159927161033
LIC_RS07200 164382164651
LIC_RS07195 164870166873
LIC_RS07190 167034168326
LIC_RS07180 168561170675
LIC_RS07125 181728183092
LIC_RS07115 183821184468
LIC_RS06855 192811193101
LIC_RS06850 193115194755
LIC_RS06825 204097204984
LIC_RS06815 207571208059
31114accn|AHMR01000011 Leptospira borgpetersenii str. Brem 307 ctg1130121824002, whole genome shotgun sequence. [Leptospira borgpetersenii str. Brem 307 | 1049786.3]211490LIC_RS05885 6392018 EMBL GBK
LIC_RS05880 20152653
LIC_RS05855 79469055
LIC_RS05850 90579866
LIC_RS05845 986910774
LIC_RS05355 1998321146
LIC_RS05300 3369234033
LIC_RS13265 4532846584
LIC_RS15200 7674477205
LIC_RS15215 7933679617
LIC_RS15220 7988081433
LIC_RS03700 8421185623
LIC_RS15130 9921499675
BACT000007 (rpsG) 115734116207
BACT000012 (rpsL) 116225116599
LIC_RS03900 116687120901
BACT000036 (rplL) 124830125210
BACT000039 (rplJ) 125261125794
BACT000030 (rplA) 125822126514
BACT000040 (rplK) 126529126957
LIC_RS03870 126990127535
LIC_RS03990 136535137362
LIC_RS03980 138944140518
LIC_RS03960 143539144030
LIC_RS03955 144027146849
BACT000009 (rpsI) 146937147335
BACT000042 (rplM) 147346147795
LIC_RS01870 172613173374
LIC_RS01865 173387174346
LIC_RS01860 174470175063
LIC_RS01855 175069176889
LIC_RS01850 176886177854
LIC_RS03275 187345188586
LIC_RS03270 188592188903
31121accn|AHMR01000020 Leptospira borgpetersenii str. Brem 307 ctg1130121824011, whole genome shotgun sequence. [Leptospira borgpetersenii str. Brem 307 | 1049786.3]206212LIC_RS06470 36835251 EMBL GBK
LIC_RS06475 54426464
LIC_RS06480 65367642
LIC_RS06485 76428154
LIC_RS06490 815610102
mreA_1 (mreA_1) 1089611330
mreA_2 (mreA_2) 1089611330
LIC_RS06510 1391314140
LIC_RS06535 3092732219
LIC_RS06550 3383334714
LIC_RS06555 3486035963
LIC_RS11500 4574147339
LIC_RS11495 4734149158
LIC_RS11470 5244652694
LIC_RS11460 5357154632
LIC_RS11445 5560256066
LIC_RS11310 7243973455
BACT000006 (rpsF) 174019174294
LIC_RS10785 174287174736
BACT000018 (rpsR) 174749175060
BACT000038 (rplI) 175070175519
LIC_RS10770 175535176863
LIC_RS10765 176863178677
LIC_RS10755 179664182084
LIC_RS10710 192116193108
LIC_RS10705 193108194241
tpiA_1 (tpiA_1) 195754196179
LIC_RS10675 196547197737
LIC_RS10670 197741198748
31129accn|AHMR01000022 Leptospira borgpetersenii str. Brem 307 ctg1130121824013, whole genome shotgun sequence. [Leptospira borgpetersenii str. Brem 307 | 1049786.3]190806LIC_RS10265 2257524380 EMBL GBK
LIC_RS10220 2750929422
LIC_RS10215 2944130121
LIC_RS09350 3774438010
LIC_RS09305 4539745984
LIC_RS09290 4839449791
LIC_RS09280 5044951450
LIC_RS09250 5757057896
LIC_RS09245 5789360124
LIC_RS09230 6342564456
LIC_RS09225 6445364701
LIC_RS09215 6501565242
LIC_RS09205 6562066393
LIC_RS09200 6639067307
LIC_RS09175 7108872578
LIC_RS09135 7956281271
LIC_RS09090 8942690406
LIC_RS09070 9356094624
LIC_RS09065 9499595171
LIC_RS09030 100779101186
LIC_RS09025 101203102279
LIC_RS09020 102297103517
BACT000057 (rpmB) 109934110218
LIC_RS08940 120643121953
LIC_RS08930 124889125491
LIC_RS08735 163214164605
BACT000021 (rpsU) 172326172535
LIC_RS08685 172593173039
LIC_RS08675 174872176629
LIC_RS08660 180196181413
31112accn|AHMR01000015 Leptospira borgpetersenii str. Brem 307 ctg1130121824006, whole genome shotgun sequence. [Leptospira borgpetersenii str. Brem 307 | 1049786.3]147576LIC_RS12770 2148522258 EMBL GBK
LIC_RS04340 2857729500
LIC_RS04345 2950330312
LIC_RS04350 3032831149
LIC_RS04360 3220432578
LIC_RS04365 3258232803
LIC_RS04370 3281233189
LIC_RS04375 3321233472
BACT000002 (rpsB) 3347634336
LIC_RS04385 3435034949
LIC_RS04395 3568336237
LIC_RS04405 3695637870
LIC_RS04410 3787739046
LIC_RS04415 3904040767
LIC_RS04420 4077242502
LIC_RS04425 4250543707
LIC_RS04440 4518147493
LIC_RS04450 4947049940
LIC_RS18310 5705257816
LIC_RS18315 5844858681
LIC_RS18330 6029761388
LIC_RS18335 6138862269
LIC_RS05530 6229163457
LIC_RS05535 6353663859
LIC_RS05555 6624468178
LIC_RS05725 136033136947
LIC_RS05750 141009141860
31116accn|AHMR01000017 Leptospira borgpetersenii str. Brem 307 ctg1130121824008, whole genome shotgun sequence. [Leptospira borgpetersenii str. Brem 307 | 1049786.3]13399116S_borgpetersenii 7602264 EMBL GBK
rrs2_3 (rrs2_3) 8581307
pfkB_1 (pfkB_1) 85678998
LIC_RS13980 3139232177
LIC_RS13975 3217732704
LIC_RS13970 3322934515
LIC_RS11825 7286973219
LIC_RS11815 7410974774
LIC_RS13025 99413100531
LIC_RS13020 100537101856
LIC_RS13015 101853102599
LIC_RS13010 102574103584
LIC_RS12990 106693107631
LIC_RS12980 108914109510
LIC_RS12945 113422114258
LIC_RS12935 115097116167
31115accn|AHMR01000016 Leptospira borgpetersenii str. Brem 307 ctg1130121824007, whole genome shotgun sequence. [Leptospira borgpetersenii str. Brem 307 | 1049786.3]112461LIC_RS06015 1563616148 EMBL GBK
LIC_RS06140 2398224974
LIC_RS06700 4113241806
LIC_RS06705 4190243164
LIC_RS13195 6892570505
LIC_RS13190 7072771602
LIC_RS13185 7161572787
LIC_RS12250 8052382364
LIC_RS12210 8779188339
31118accn|AHMR01000006 Leptospira borgpetersenii str. Brem 307 ctg1130121823997, whole genome shotgun sequence. [Leptospira borgpetersenii str. Brem 307 | 1049786.3]73834LIC_RS07745 68697405 EMBL GBK
LIC_RS07760 79438251
LIC_RS07775 1147513127
LIC_RS07780 1313315880
LIC_RS07795 1601917065
LIC_RS07805 1755618068
LIC_RS07825 2445224814
LIC_RS07855 3766638517
LIC_RS07865 3884639397
31122accn|AHMR01000021 Leptospira borgpetersenii str. Brem 307 ctg1130121824012, whole genome shotgun sequence. [Leptospira borgpetersenii str. Brem 307 | 1049786.3]14927LIC_RS10595 68747224 EMBL GBK
LIC_RS10590 72367769
31124 accn|AHMR01000023 Leptospira borgpetersenii str. Brem 307 ctg1130121824014, whole genome shotgun sequence. [Leptospira borgpetersenii str. Brem 307 | 1049786.3] 2021
31111 accn|AHMR01000019 Leptospira borgpetersenii str. Brem 307 ctg1130121824010, whole genome shotgun sequence. [Leptospira borgpetersenii str. Brem 307 | 1049786.3] 1652
31127 accn|AHMR01000005 Leptospira borgpetersenii str. Brem 307 ctg1130121823992, whole genome shotgun sequence. [Leptospira borgpetersenii str. Brem 307 | 1049786.3] 1065
31119 accn|AHMR01000007 Leptospira borgpetersenii str. Brem 307 ctg1130121823998, whole genome shotgun sequence. [Leptospira borgpetersenii str. Brem 307 | 1049786.3] 765
31130 accn|AHMR01000001 Leptospira borgpetersenii str. Brem 307 ctg1130121823748, whole genome shotgun sequence. [Leptospira borgpetersenii str. Brem 307 | 1049786.3] 530
31132 accn|AHMR01000004 Leptospira borgpetersenii str. Brem 307 ctg1130121823984, whole genome shotgun sequence. [Leptospira borgpetersenii str. Brem 307 | 1049786.3] 480
31120 accn|AHMR01000003 Leptospira borgpetersenii str. Brem 307 ctg1130121823982, whole genome shotgun sequence. [Leptospira borgpetersenii str. Brem 307 | 1049786.3] 373
31126 accn|AHMR01000002 Leptospira borgpetersenii str. Brem 307 ctg1130121823787, whole genome shotgun sequence. [Leptospira borgpetersenii str. Brem 307 | 1049786.3] 345