Full information on isolate ES4-C-A1 (id:813)
Provenance/primary metadata
- id
- 813
- isolate
- ES4-C-A1
- biosample
- SAMN07411416
- accession number
- ASM281220v1
- clade
- P2
- species
- neocaledonica
- serogroup
- Unknown
- serovar
- Unknown
- isolation year
- 2016
- world region
- Australia and New Zealand
- country
- New Caledonia
- host
- soil
- sample type
- Culture
- source lab
- Institut Pasteur Montevideo
- sender
- Linda Grillová, Institut Pasteur, Paris
- curator
- Jean-François Mariet, Institut Pasteur, Paris (E-mail: jean-francois.mariet@pasteur.fr)
- update history
- 24 updates show details
- date entered
- 2018-11-26
- datestamp
- 2024-07-15
Publications (2)
- Thibeaux R, Girault D, Bierque E, Soupé-Gilbert ME, Rettinger A, Douyère A, Meyer M, Iraola G, Picardeau M, Goarant C (2018). Biodiversity of Environmental Leptospira: Improving Identification and Revisiting the Diagnosis. Front Microbiol 9:816
- Thibeaux R, Iraola G, Ferrés I, Bierque E, Girault D, Soupé-Gilbert ME, Picardeau M, Goarant C (2018). Deciphering the unexplored Leptospira diversity from soils uncovers genomic evolution to virulence. Microb Genom 4:
Sequence bin
- contigs
- 38
- total length
- 4,213,808 bp
- max length
- 537,703 bp
- mean length
- 110,890 bp
- N50
- 452,736
- L50
- 5
- N90
- 146,807
- L90
- 11
- N95
- 94,559
- L95
- 13
- %GC
- 40.17
- Ns
- 179
- gaps
- 2
- loci tagged
- 1,112
Assembly checks
| Check | Status | Warn/fail reason |
|---|---|---|
| Number of contigs | ||
| Assembly size | ||
| Minimum N50 | ||
| %GC |
Annotation quality metrics
Scheme completion
| Scheme | Scheme loci | Designated loci | Annotation | |
|---|---|---|---|---|
| Score | Status | |||
| cgMLST | 545 | 538 | 98 | |
Similar isolates (determined by classification schemes)
No similar isolates at any threshold. Show groups
Schemes and loci
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Tools
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