Full information on isolate 201801763bis (id:811)
Provenance/primary metadata
- id
- 811
- isolate
- 201801763bis
- alias
- UI37640
- clade
- P1
- species
- interrogans
- serogroup
- Unknown
- serovar
- Unknown
- isolation year
- 2017
- passage
- P31
- world region
- South-eastern Asia
- country
- Laos
- host
- human
- sample type
- Blood clot
- source lab
- LOMWRU
- sender
- Céline Lorioux, Institut Pasteur, Paris, France
- curator
- Auto Tagger
- update history
- 16 updates show details
- date entered
- 2018-11-26
- datestamp
- 2025-07-22
Sequence bin
- method
- Illumina
- contigs
- 356
- total length
- 4,653,741 bp
- max length
- 118,841 bp
- mean length
- 13,073 bp
- N50
- 32,983
- L50
- 44
- N90
- 8,247
- L90
- 147
- N95
- 4,523
- L95
- 181
- %GC
- 35.04
- Ns
- 0
- gaps
- 0
- loci tagged
- 1,163
Assembly checks
| Check | Status | Warn/fail reason |
|---|---|---|
| Number of contigs | ||
| Assembly size | ||
| Minimum N50 | ||
| %GC |
Annotation quality metrics
Scheme completion
| Scheme | Scheme loci | Designated loci | Annotation | |
|---|---|---|---|---|
| Score | Status | |||
| cgMLST | 545 | 540 | 99 | |
Similar isolates (determined by classification schemes)
Some groups only contain this isolate. Show single groups
Experimental schemes are subject to change and are not a stable part of the nomenclature.
| Classification scheme | Underlying scheme | Clustering method | Mismatch threshold | Status | Group |
|---|---|---|---|---|---|
| Test-150 | cgMLST | Single-linkage | 150 | experimental | 23 (4 isolates) |
| Test-200 | cgMLST | Single-linkage | 200 | experimental | 23 (4 isolates) |
| Test-300 | cgMLST | Single-linkage | 300 | experimental | 5 (75 isolates) |
| Cluster_40_cgMLST | cgMLST | Single-linkage | 40 | experimental | 300 (1 isolate) |
| Test-50 | cgMLST | Single-linkage | 50 | experimental | 293 (1 isolate) |
| Test-110 | cgMLST | Single-linkage | 110 | experimental | 277 (1 isolate) |
| Test-150 | cgMLST | Single-linkage | 150 | experimental | 23 (4 isolates) |
| Test-20 | cgMLST | Single-linkage | 20 | experimental | 320 (1 isolate) |
| Test-200 | cgMLST | Single-linkage | 200 | experimental | 23 (4 isolates) |
| Test-30 | cgMLST | Single-linkage | 30 | experimental | 307 (1 isolate) |
| Test-300 | cgMLST | Single-linkage | 300 | experimental | 5 (75 isolates) |
| Test-60 | cgMLST | Single-linkage | 60 | experimental | 290 (1 isolate) |
| Test-80 | cgMLST | Single-linkage | 80 | experimental | 283 (1 isolate) |
Schemes and loci
Navigate and select schemes within tree to display allele designations
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