Home About Us Contact What's New
Home>Organism>Leptospira cgMLST>Isolate information
Help

Full information on isolate Noumea25 (id:234)

Provenance/primary metadata

id
234
isolate
Noumea25
biosample
SAMN00739251
clade
P1
species
borgpetersenii
serogroup
Ballum
serovar
Unknown
world region
Australia and New Zealand
country
New Caledonia
city
Unknown
host
human
sample type
Unknown
source lab
MaGe
comments
Pathogen
sender
Julien Guglielmini, Institut Pasteur, France
curator
Jean-François Mariet, Institut Pasteur, Paris, France (E-mail: jean-francois.mariet@pasteur.fr)
update history
952 updates show details
date entered
2016-12-01
datestamp
2024-04-17

Versions

More than one version of this isolate record exist.

Newer versions
2005

Publications (2)

  • Guglielmini J, Bourhy P, Schiettekatte O, Zinini F, Brisse S, Picardeau M (2019). Genus-wide Leptospira core genome multilocus sequence typing for strain taxonomy and global surveillance. PLoS Negl Trop Dis 13:e0007374
  • Guglielmini J, Bourhy P, Schiettekatte O, Zinini F, Brisse S, Picardeau M (2020). Correction: Genus-wide Leptospira core genome multilocus sequence typing for strain taxonomy and global surveillance. PLoS Negl Trop Dis 14:e0008673

Sequence bin

method
Unknown
contigs
108
total length
3,957,863 bp
max length
163,228 bp
mean length
36,647 bp
N50
75,399
L50
18
N90
19,039
L90
60
N95
11,982
L95
73
%GC
40.04
Ns
3
gaps
3
loci tagged
547

Show sequence bin

Assembly checks

CheckStatusWarn/fail reason
Number of contigs
Assembly size
Minimum N50
%GC

Annotation quality metrics

Scheme completion

SchemeScheme lociDesignated lociAnnotation
ScoreStatus
cgMLST54547486

Analysis

rMLST species identification

RankTaxonTaxonomySupportMatches
SPECIES Leptospira borgpetersenii Spirochaetes > Spirochaetia > Leptospirales > Leptospiraceae > Leptospira > Leptospira borgpetersenii 100%

Analysis performed: 2022-12-05

Similar isolates (determined by classification schemes)

Some groups only contain this isolate. Show single groups

Experimental schemes are subject to change and are not a stable part of the nomenclature.

Classification schemeUnderlying schemeClustering methodMismatch thresholdStatusGroup
Cluster_40_cgMLSTcgMLSTSingle-linkage40experimental15 (114 isolates)
Test-75cgMLSTSingle-linkage75experimental15 (4 isolates)
Test-50cgMLSTSingle-linkage50experimental15 (114 isolates)
Test-110cgMLSTSingle-linkage110experimental14 (76 isolates)
Test-150cgMLSTSingle-linkage150experimental13 (76 isolates)
Test-20cgMLSTSingle-linkage20experimental16 (76 isolates)
Test-200cgMLSTSingle-linkage200experimental13 (76 isolates)
Test-220cgMLSTSingle-linkage220experimental13 (4 isolates)
Test-250cgMLSTSingle-linkage250experimental13 (4 isolates)
Test-30cgMLSTSingle-linkage30experimental15 (114 isolates)
Test-300cgMLSTSingle-linkage300experimental8 (135 isolates)
Test-60cgMLSTSingle-linkage60experimental15 (114 isolates)
Test-80cgMLSTSingle-linkage80experimental14 (114 isolates)
Cluster_40_cgMLSTcgMLSTSingle-linkage40experimental15 (114 isolates)
Test-75cgMLSTSingle-linkage75experimental15 (4 isolates)
Test-50cgMLSTSingle-linkage50experimental15 (114 isolates)
Test-10cgMLSTSingle-linkage10experimental133 (1 isolate)
Test-110cgMLSTSingle-linkage110experimental14 (76 isolates)
Test-150cgMLSTSingle-linkage150experimental13 (76 isolates)
Test-20cgMLSTSingle-linkage20experimental16 (76 isolates)
Test-200cgMLSTSingle-linkage200experimental13 (76 isolates)
Test-220cgMLSTSingle-linkage220experimental13 (4 isolates)
Test-250cgMLSTSingle-linkage250experimental13 (4 isolates)
Test-30cgMLSTSingle-linkage30experimental15 (114 isolates)
Test-300cgMLSTSingle-linkage300experimental8 (135 isolates)
Test-60cgMLSTSingle-linkage60experimental15 (114 isolates)
Test-80cgMLSTSingle-linkage80experimental14 (114 isolates)

Schemes and loci

Navigate and select schemes within tree to display allele designations

Tools

Export:
Analysis: