Full information on isolate BUT 6 (id:226)
Provenance/primary metadata
- id
- 226
- isolate
- BUT 6
- accession number
- 1193011
- clade
- P2
- species
- fainei
- serogroup
- Hurstbridge
- serovar
- Hurstbridge
- sequencing year
- 2012
- world region
- Australia and New Zealand
- country
- Australia
- host
- Pig
- sample type
- Unknown
- source lab
- Craig Venter Institute
- sender
- Julien Guglielmini, Institut Pasteur
- curator
- Auto Tagger
- update history
- 991 updates show details
- date entered
- 2016-12-01
- datestamp
- 2022-12-02
Versions
More than one version of this isolate record exist.
- Newer versions
- 1864
Publications (2)
- Guglielmini J, Bourhy P, Schiettekatte O, Zinini F, Brisse S, Picardeau M (2019). Genus-wide Leptospira core genome multilocus sequence typing for strain taxonomy and global surveillance. PLoS Negl Trop Dis 13:e0007374
- Guglielmini J, Bourhy P, Schiettekatte O, Zinini F, Brisse S, Picardeau M (2020). Correction: Genus-wide Leptospira core genome multilocus sequence typing for strain taxonomy and global surveillance. PLoS Negl Trop Dis 14:e0008673
Sequence bin
- contigs
- 43
- total length
- 4,309,901 bp
- max length
- 548,177 bp
- mean length
- 100,231 bp
- N50
- 141,056
- L50
- 10
- N90
- 53,845
- L90
- 28
- N95
- 48,129
- L95
- 32
- %GC
- 43.56
- Ns
- 1
- gaps
- 1
- loci tagged
- 1,112
Assembly checks
| Check | Status | Warn/fail reason |
|---|---|---|
| Number of contigs | ||
| Assembly size | ||
| Minimum N50 | ||
| %GC |
Annotation quality metrics
Scheme completion
| Scheme | Scheme loci | Designated loci | Annotation | |
|---|---|---|---|---|
| Score | Status | |||
| cgMLST | 545 | 510 | 93 | |
Similar isolates (determined by classification schemes)
No similar isolates at any threshold. Show groups
Schemes and loci
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Tools
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