Full information on isolate YH101 (id:1872)
Provenance/primary metadata
- id
- 1872
- isolate
- YH101
- alias
- 29105847
- biosample
- SAMD00111977
- accession number
- ASM311485v1
- clade
- S2
- species
- ryugenii
- serogroup
- Unknown
- serovar
- unknown
- isolation year
- 2014
- sequencing year
- 2018
- world region
- Eastern Asia
- country
- Japan
- city
- Shizuoka
- host
- environment
- sample type
- pond water
- source lab
- Lab Parasitology Hokkaido Univ
- sender
- Jean-François Mariet
- curator
- Jean-François Mariet, Institut Pasteur, Paris (E-mail: jean-francois.mariet@pasteur.fr)
- update history
- 4 updates show details
- date entered
- 2024-06-27
- datestamp
- 2024-07-15
Sequence bin
- contigs
- 24
- total length
- 3,951,395 bp
- max length
- 923,341 bp
- mean length
- 164,642 bp
- N50
- 715,814
- L50
- 3
- N90
- 260,492
- L90
- 7
- N95
- 161,513
- L95
- 8
- %GC
- 39.92
- Ns
- 742
- gaps
- 3
- loci tagged
- 292
Assembly checks
| Check | Status | Warn/fail reason |
|---|---|---|
| Number of contigs | ||
| Assembly size | ||
| Minimum N50 | ||
| %GC |
Annotation quality metrics
Scheme completion
| Scheme | Scheme loci | Designated loci | Annotation | |
|---|---|---|---|---|
| Score | Status | |||
| cgMLST | 545 | 237 | 43 | |
Schemes and loci
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