Full information on isolate FH1-B-B1 (id:1867)
Provenance/primary metadata
- id
- 1867
- isolate
- FH1-B-B1
- biosample
- SAMN07411417
- accession number
- ASM281187v1
- clade
- P2
- species
- perolatii
- serogroup
- Unknown
- serovar
- unknown
- isolation year
- 2016
- sequencing year
- 2017
- world region
- Melanesia
- country
- New Caledonia
- host
- soil
- sample type
- Culture
- source lab
- Institut Pasteur Montevideo
- sender
- Jean-François Mariet
- curator
- Jean-François Mariet, Institut Pasteur, Paris (E-mail: jean-francois.mariet@pasteur.fr)
- update history
- 5 updates show details
- date entered
- 2024-06-11
- datestamp
- 2024-07-15
Publications (2)
- Thibeaux R, Girault D, Bierque E, Soupé-Gilbert ME, Rettinger A, Douyère A, Meyer M, Iraola G, Picardeau M, Goarant C (2018). Biodiversity of Environmental Leptospira: Improving Identification and Revisiting the Diagnosis. Front Microbiol 9:816
- Thibeaux R, Iraola G, Ferrés I, Bierque E, Girault D, Soupé-Gilbert ME, Picardeau M, Goarant C (2018). Deciphering the unexplored Leptospira diversity from soils uncovers genomic evolution to virulence. Microb Genom 4:
Sequence bin
- contigs
- 49
- total length
- 3,985,918 bp
- max length
- 819,540 bp
- mean length
- 81,346 bp
- N50
- 332,586
- L50
- 4
- N90
- 65,029
- L90
- 15
- N95
- 36,734
- L95
- 19
- %GC
- 42.36
- Ns
- 0
- gaps
- 0
- loci tagged
- 347
Assembly checks
| Check | Status | Warn/fail reason |
|---|---|---|
| Number of contigs | ||
| Assembly size | ||
| Minimum N50 | ||
| %GC |
Annotation quality metrics
Scheme completion
| Scheme | Scheme loci | Designated loci | Annotation | |
|---|---|---|---|---|
| Score | Status | |||
| cgMLST | 545 | 293 | 53 | |
Schemes and loci
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