Full information on isolate BJ3 (id:1186)
Provenance/primary metadata
- id
- 1186
- isolate
- BJ3
- biosample
- SAMN14572009
- accession number
- JACCKC000000000
- clade
- P1
- species
- yasudae
- serogroup
- Unknown
- serovar
- unknown
- world region
- South-eastern Asia
- country
- Malaysia
- host
- environment
- sample type
- environment
- source lab
- Universiti Kebangsaan Malaysia
- sender
- Mathieu Picardeau, Institut Pasteur
- curator
- Jean-François Mariet, Institut Pasteur, Paris (E-mail: jean-francois.mariet@pasteur.fr)
- update history
- 10 updates show details
- date entered
- 2021-10-04
- datestamp
- 2024-07-15
Publication (1)
- Shamsusah NA, Agustar HK, Amran F, Hod R (2021). Draft Genome Sequence of Leptospira yasudae Strain BJ3, Isolated from the Soil of an Ex Situ Wild Animal Conservation Area. Microbiol Resour Announc 10:e0072321
Sequence bin
- contigs
- 26
- total length
- 4,537,672 bp
- max length
- 1,801,326 bp
- mean length
- 174,526 bp
- N50
- 642,216
- L50
- 2
- N90
- 98,897
- L90
- 10
- N95
- 85,686
- L95
- 12
- %GC
- 45.23
- Ns
- 0
- gaps
- 0
- loci tagged
- 581
Assembly checks
| Check | Status | Warn/fail reason |
|---|---|---|
| Number of contigs | ||
| Assembly size | ||
| Minimum N50 | ||
| %GC |
Annotation quality metrics
Scheme completion
| Scheme | Scheme loci | Designated loci | Annotation | |
|---|---|---|---|---|
| Score | Status | |||
| cgMLST | 545 | 526 | 96 | |
Similar isolates (determined by classification schemes)
No similar isolates at any threshold. Show groups
Schemes and loci
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Tools
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