HomeAbout UsContactWhat’s NewRegister
Yersinia
© Images : Institut Pasteur/Marie-Christine Prévost et Anne Derbise © Design : Institut Pasteur

This page provides access to genotypic data for Yersinia isolates based on Multilocus Sequence Typing (MLST) and core genome MLST (cgMLST). See references for more details.

yersiniaMLST@pasteur.fr

⚠ Maintenance: A BIGSdb-Pasteur maintenance is scheduled on Tuesday, May 12th (Central European Time). During this period, the server and API will be unavailable. Please note that job submission will not be available and all unfinished jobs will be killed. Sorry for any inconvenience. If any questions, contact us

Alleles & profiles database
The typing database contains nomenclature - allele definitions that provide an identifier for every unique allele sequence, and MLST profiles that index each unique combination of alleles with a sequence type (ST).
Isolates & genomes database
The isolate database consists of isolate records containing provenance and phenotype information linked to molecular typing information. These records may also include genome assemblies.
Data submission
Before contacting the curators, please download and read carefully the files below:
Data Submission Guidelines
Curators access
Data Curation is performed on a voluntary basis and is based on a community effort.
Sequences and Profiles
Isolates
Other Information
BIGSdb manual
Correspondance between cgST (cgMLST profiles) and taxonomic assignment or strain characterization
Edit on GitLab