⛔ Maintenance: A BIGSdb-Pasteur maintenance is scheduled on Friday, July 04th and Saturday, July 05th. All services will be offline until late in the evening (Central European Time). During this period, the server and API will be unavailable. Please note that job submission not be available and all unfinished jobs will be killed. Sorry for any inconvenience. If any questions, contact us
Data access policy note: since January 1st, 2025, registration and authentication are mandatory to access all data curated after this date, either via the web interface or via the application programming interface (API authentication help link). Please contact us if you have any questions.
Core genome MLST
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Savin C, Criscuolo A, Guglielmini J, Le Guern A-S, Carniel E, Pizarro-Cerdá J, et al. Genus-wide Yersinia core-genome multilocus sequence typing for species identification and strain characterization. Microb Genom 2019 Oct; 5(10). PMID 31580794
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Savin, C., Le Guern, A. S., Chereau, F., Guglielmini, J., Heuzé, G., Demeure, C., & Pizarro-Cerdá, J. (2022). First Description of a Yersinia pseudotuberculosis Clonal Outbreak in France, Confirmed Using a New Core Genome Multilocus Sequence Typing Method. Microbiology spectrum, 10(4), PMID: 35863020
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Le Guern, A.-S., Savin, C., Chereau, F., Tessier, S., Guglielmini, J., Brémont, S., & Pizarro-Cerdá, J. (2024). A novel cgMLST for genomic surveillance of Yersinia enterocolitica infections in France allowed the detection and investigation of outbreaks in 2017-2021. Microbiology spectrum, 12(6), PMID: 38651883