Data access policy note: since January 1st, 2025, registration and authentication are mandatory to access all data curated after this date, either via the web interface or via the application programming interface (API authentication help link).
To request an API key, follow the steps outlined at: Requesting a BIGSdb-Pasteur API Key
Please contact us if you have any questions.
Just out ! A novel version of diphtOscan is available at https://gitlab.pasteur.fr/BEBP/diphtoscan. It is easier to install and to use on local computers.
diphtOscan scans genomes of the Corynebacterium diphtheriae species complex and extracts information used for clinical and public health management, including diphtheria toxin and antimicrobial resistance genes, biovar, species and subtyping information. This release also supports authenticated access to BIGSdb-Pasteur’s diphtheria source database, ensuring access to the most recent genotype nomenclature.