Institut Pasteur MLST databases and software

This page provides access to genotypic data for isolates of Bacteroides fragilis including Division I and Division II (Bacteroides hominis) based on core genome MLST (cgMLST).

fragilisMLST@pasteur.fr

⚠ Maintenance: A BIGSdb-Pasteur maintenance is scheduled from Friday, July 17th 6PM (Central European Time) to Monday, July 20th morning. During this period, the server and API will be unavailable. Please note that job submission will not be available and all unfinished jobs will be killed. Sorry for any inconvenience. If any questions, contact us

Alleles & profiles database

The typing database contains nomenclature - allele definitions that provide an identifier for every unique allele sequence, and MLST profiles that index each unique combination of alleles with a sequence type (ST).

Isolates & genomes database

The isolate database consists of isolate records containing provenance and phenotype information linked to molecular typing information. These records may also include genome assemblies.

Data submission

Before contacting the curators, please download and read carefully the files below:

Data Submission Guidelines

Infographic

Template for isolates

Template for genomes

Curators access

Data Curation is performed on a voluntary basis and is based on a community effort.