Full information on isolate 2020/00350 (id:9460)
Projects
This isolate is a member of the following project:
- Public isolates
- This project contains the isolates that should be publicly available through the public access database.
Provenance/primary metadata
- id
- 9460
- isolate
- 2020/00350
- alias
- IP43476
- species genotypic
- pseudotuberculosis
- genotype
- 15
- isolation date
- 10/03/2020
- sender
- Cyril Savin, Institut Pasteur, Paris
- curator
- Auto Tagger
- update history
- 5 updates show details
- date entered
- 2020-05-31
- datestamp
- 2020-06-01
Sequence bin
- contigs
- 112
- total length
- 4,676,702 bp
- max length
- 272,370 bp
- mean length
- 41,757 bp
- N50
- 96,525
- L50
- 16
- N90
- 34,920
- L90
- 47
- N95
- 21,889
- L95
- 55
- %GC
- 47.49
- Ns
- 0
- gaps
- 0
- loci tagged
- 2,039
Assembly checks
| Check | Status | Warn/fail reason |
|---|---|---|
| Number of contigs | ||
| Assembly size | ||
| Minimum N50 | ||
| %GC |
Annotation quality metrics
Scheme completion
| Scheme | Scheme loci | Designated loci | Annotation | |
|---|---|---|---|---|
| Score | Status | |||
| Yersinia cgMLST | 500 | 500 | 100 | |
| Y.enterocolitica cgMLST | 1727 | 500 | 28 | |
| Y.pseudotuberculosis cgMLST | 1921 | 1921 | 100 | |
Similar isolates (determined by classification schemes)
No similar isolates at any threshold. Show groups
Schemes and loci
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Tools
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