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Full information on isolate 2020/00224 (id:9319)

Projects

This isolate is a member of the following project:

Public isolates: This project contains the isolates that should be publicly available through the public access database.

Provenance/primary metadata

id: 9319
isolate: 2020/00224
alias: IP43355
species genotypic: pseudotuberculosis
genotype: 11
isolation date: 17/02/2020
sender: Sylvie Brémont, Institut Pasteur, Paris
curator: Auto Tagger
update history: 6 updates show details
date entered: 2020-02-27
datestamp: 2020-02-27

Sequence bin

method: Illumina
contigs: 227
total length: 4,818,169 bp
max length: 201,999 bp
mean length: 21,226 bp
N50: 70,539
L50: 23
N90: 13,566
L90: 80
N95: 7,013
L95: 104
%GC: 47.45
Ns: 0
gaps: 0
loci tagged: 1,993

Show sequence bin

Assembly checks

Check	Status	Warn/fail reason
Number of contigs
Assembly size
Minimum N50
%GC

Annotation quality metrics

Scheme completion

Scheme	Scheme loci	Designated loci	Annotation
Scheme	Scheme loci	Designated loci	Score	Status
Yersinia cgMLST	500	500	100
Y.enterocolitica cgMLST	1727	500	28
Y.pseudotuberculosis cgMLST	1921	1918	99

Analysis

rMLST species identification

Rank	Taxon	Taxonomy	Support	Matches
SPECIES	Yersinia pseudotuberculosis	Pseudomonadota > Gammaproteobacteria > Enterobacterales > Yersiniaceae > Yersinia > Yersinia pseudotuberculosis	100%

Analysis performed: 2025-06-03

Similar isolates (determined by classification schemes)

No similar isolates at any threshold. Show groups Hide groups

Schemes and loci

All loci
- Typing
  - Genus
    - Yersinia cgMLST
    - Species
      - Y.enterocolitica cgMLST
      - Y.pseudotuberculosis cgMLST
- Other schemes
  - Virulence factors

Navigate and select schemes within tree to display allele designations

Tools

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